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[bioontology-support] Mismatching of views' base version
swt at stanford.edu
Mon May 10 11:25:02 PDT 2010
Thanks for fixing the base versions of the views.
How about the other problem I reported?
> On Friday I uploaded new versions of the ICECI views. However,
> "iceci-descriptor_for_intent V.1 - V.7" (ont.id: 2030, ont ver ID:
> 43030) and "iceci-details_for_activity O1-O2 S1-S2" (ont.id: 2038, ont
> ver ID: 43031) are not uploaded/parsed properly. I've attached them in
> case you are able to fix the problems from your end.
Is "uploading again" the remedy?
With best regards,
On 5/10/2010 11:19 AM, Natasha Noy wrote:
> Hi Samson,
> Yes, we should really have a way for you to indicate which version of
> the ontology you are attaching your view to. And the current behavior
> is a bug anyway (I added it to the tracker).
> I've also fixed the metadata for these views. Things should be good now.
> On May 9, 2010, at 3:26 PM, Samson Tu wrote:
>> On Friday I updated the Bioportal's ICECI ontology to OWL version
>> 1.02. Then I updated the 11 views of the ontology so that they can be
>> linked to the new version. However, Bioportal linked the views to the
>> earlier version (OWL version 1.01, see screen shot below)
>> How can I correct the mismatch in the binding of views? When I was
>> updating the views, I didn't see a way to specify the correct base
>> version. I think it important that an explicit mechanism be there
>> for the correct matching of versions. Not being able to specify
>> explicitly the correct base version when creating views is a problem.
>> Aside from the problem when bioportal's "most recent" version is
>> incorrect, I can certainly imagine situations where we want to create
>> views whose base versions are not necessarily the most recent version
>> of the ontology.
>> Samson Tu email: swt at stanford.edu
>> Senior Research Scientist web: www.stanford.edu/~swt/
>> Center for Biomedical Informatics Research phone: 1-650-725-3391
>> Stanford University fax: 1-650-725-7944
>> bioontology-support mailing list
>> bioontology-support at lists.stanford.edu
Samson Tu email: swt at stanford.edu
Senior Research Scientist web: www.stanford.edu/~swt/
Center for Biomedical Informatics Research phone: 1-650-725-3391
Stanford University fax: 1-650-725-7944
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