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[bioontology-support] Mismatching of views' base version

Samson Tu swt at stanford.edu
Mon May 10 11:25:02 PDT 2010


Thanks for fixing the base versions of the views.

How about the other problem I reported?

> On Friday I uploaded new versions of the ICECI views. However, 
> "iceci-descriptor_for_intent V.1 - V.7" (ont.id: 2030, ont ver ID: 
> 43030) and "iceci-details_for_activity O1-O2 S1-S2" (ont.id: 2038, ont 
> ver ID: 43031) are not uploaded/parsed properly. I've attached them in 
> case you are able to fix the problems from your end. 

Is "uploading again" the remedy?

With best regards,
Samson


On 5/10/2010 11:19 AM, Natasha Noy wrote:
> Hi Samson,
>
> Yes, we should really have a way for you to indicate which version of 
> the ontology you are attaching your view to. And the current behavior 
> is a bug anyway (I added it to the tracker).
>
> I've also fixed the metadata for these views. Things should be good now.
>
> Natasha
>
>
> On May 9, 2010, at 3:26 PM, Samson Tu wrote:
>
>> Hi,
>>
>> On Friday I updated the Bioportal's ICECI ontology to OWL version 
>> 1.02. Then I updated the 11 views of the ontology so that they can be 
>> linked to the new version. However, Bioportal linked the views to the 
>> earlier version (OWL version 1.01, see screen shot below)
>>
>> How can I correct the mismatch in the binding of views? When I was 
>> updating the views, I didn't see a way to specify the correct base 
>> version.  I think it important that an explicit mechanism be there 
>> for the correct matching of versions. Not being able to specify 
>> explicitly the correct base version when creating views is a problem. 
>> Aside from the problem when bioportal's "most recent" version is 
>> incorrect, I can certainly imagine situations where we want to create 
>> views whose base versions are not necessarily the most recent version 
>> of the ontology.
>>
>>
>> <moz-screenshot-20.png>
>> -- 
>> Samson Tu                                   email: swt at stanford.edu
>> Senior Research Scientist                   web: www.stanford.edu/~swt/
>> Center for Biomedical Informatics Research  phone: 1-650-725-3391
>> Stanford University                         fax: 1-650-725-7944
>> _______________________________________________
>> bioontology-support mailing list
>> bioontology-support at lists.stanford.edu
>> https://mailman.stanford.edu/mailman/listinfo/bioontology-support
>

-- 
Samson Tu                                   email: swt at stanford.edu
Senior Research Scientist                   web: www.stanford.edu/~swt/
Center for Biomedical Informatics Research  phone: 1-650-725-3391
Stanford University                         fax: 1-650-725-7944




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