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[bioontology-support] EDAM parsing error

Trish Whetzel whetzel at
Thu May 13 10:57:17 PDT 2010

Hi Jon,

We are looking into this error. One item I noticed in reviewing this  
ontology is that it uses many relations that are not part of the  
standard OBO format relations, e.g. is_a, part_of, which may be part  
of the problem. What is the difference between versions  beta04 and  
beta05 - I was not able to open beta05.


On May 13, 2010, at 4:57 AM, Jon Ison wrote:

> Hi there
> I submitted yesterday an OBO ontology (EDAM, Ontology Id: 1498) but  
> I get a parse error.  Any
> chance you could send me an error report please?  I suspect it might  
> be because my Typedefs are at
> the bottom rather than the top of the file, but I'm not 100%.
> Great resource by the way.
> Cheers
> Jon
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> bioontology-support mailing list
> bioontology-support at

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