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[bioontology-support] Rest Services

Uday Evani uevani at buckinstitute.org
Thu May 13 10:56:45 PDT 2010


Thanks.

Uday

Trish Whetzel wrote:
> There is not a hard limit on the number of words that can be submitted  
> as one block of text for annotation. Generally in the range of  
> 2000-4000 words. Clement can confirm. However, the stress on the  
> system will be increased as more text is sent in one block if this  
> also uses the parameters set to the max, e.g. all ontologies, adding  
> in the mappings and the is-a expansion.
>
> Trish
>
>
> On May 12, 2010, at 6:37 PM, Uday Evani wrote:
>
>   
>> Hi Trish,
>>
>> Is there a limit on the number of words one can submit to the  
>> annotator ?
>>
>> Thanks
>> Uday
>>
>> Trish Whetzel wrote:
>>     
>>> Hi Mathew,
>>>
>>> The rootpath call: http://rest.bioontology.org/bioportal/virtual/rootpath/1070/GO:0055085?email=udayevani@gmail.com 
>>>     is now working.
>>>
>>> Trish
>>>
>>>
>>> On Apr 29, 2010, at 2:11 PM, Mathew Fleisch wrote:
>>>
>>>
>>>       
>>>> I am probably just doing something wrong, but I am pretty sure  
>>>> these  both worked a month or two ago:
>>>>
>>>> http://rest.bioontology.org/obs/annotator?longestOnly=true&wholeWordOnly=true&ontologiesToExpand=MSH&ontologiesToKeepInResult=MSH&semanticTypes=&withDefaultStopWords=true&format=xml&levelMax=0&mappingTypes=null&textToAnnotate=Phosphorylation
>>>>
>>>> http://rest.bioontology.org/bioportal/virtual/rootpath/1070/GO:0055085?email=udayevani@gmail.com
>>>>
>>>> Mathew Fleisch
>>>> 415.209.2000.6735
>>>> mfleisch at buckinstitute.org
>>>> ________________________________________
>>>> From: Trish Whetzel [whetzel at stanford.edu]
>>>> Sent: Thursday, April 29, 2010 2:02 PM
>>>> To: Mathew Fleisch
>>>> Cc: Uday Evani; support
>>>> Subject: Re: Rest Services
>>>>
>>>> Can you send an example that is not working?
>>>>
>>>> Thanks,
>>>> Trish
>>>>
>>>>
>>>> On Apr 29, 2010, at 1:59 PM, Mathew Fleisch wrote:
>>>>
>>>> hierarchy and bioportal
>>>> I will add myself to that mailing list.
>>>>
>>>> Mathew Fleisch
>>>> 415.209.2000.6735
>>>> mfleisch at buckinstitute.org<mailto:mfleisch at buckinstitute.org>
>>>> ________________________________________
>>>> From: Trish Whetzel [whetzel at stanford.edu]
>>>> Sent: Thursday, April 29, 2010 1:59 PM
>>>> To: Mathew Fleisch
>>>> Cc: support
>>>> Subject: Re: Rest Services
>>>>
>>>> Hi Mathew,
>>>>
>>>> Which Web services are you using? We do announce changes to the  
>>>> Web  services prior to making changes to the production Web  
>>>> services and  announce these changes on the bioportal-announce  
>>>> mailing list, https://mailman.stanford.edu/pipermail/bioportal-announce 
>>>>  .
>>>>
>>>> Trish
>>>>
>>>>
>>>> On Apr 29, 2010, at 1:39 PM, Mathew Fleisch wrote:
>>>>
>>>> Hello Trish,
>>>> My name is Mathew and I am with Sean Mooney at the Buck Institute.  
>>>> I  have been developing a tool that uses rest services and my  
>>>> scripts  have stopped working... What has changed? what do I need  
>>>> to update?  Thank you in advance for your help.
>>>>
>>>>
>>>> Mathew Fleisch
>>>> 415.209.2000.6735
>>>> mfleisch at buckinstitute.org<mailto:mfleisch at buckinstitute.org>
>>>>
>>>> Trish Whetzel, PhD
>>>> Outreach Coordinator
>>>> The National Center for Biomedical Ontology
>>>> Ph: 650-721-2378
>>>> whetzel at stanford.edu<mailto:whetzel at stanford.edu>
>>>> http://www.bioontology.org
>>>>
>>>>
>>>>
>>>>
>>>> Trish Whetzel, PhD
>>>> Outreach Coordinator
>>>> The National Center for Biomedical Ontology
>>>> Ph: 650-721-2378
>>>> whetzel at stanford.edu<mailto:whetzel at stanford.edu>
>>>> http://www.bioontology.org
>>>>
>>>>
>>>>
>>>>
>>>>         
>>> .
>>>
>>>
>>>       
>
> .
>
>   



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