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[bioontology-support] full id vs short id in ontology terms

Trish Whetzel whetzel at stanford.edu
Tue May 18 09:21:42 PDT 2010


Hi Lena,

As a quick note, we are developing a PROTOTYPE triple store that is  
accessible at: http://sparql.bioontology.org:8080/webui. As for the  
other items, a fix has been implemented to provide the full URI via  
the widgets and I am checking to see when this will be available on  
the production site.

Trish


On May 18, 2010, at 9:02 AM, Helena Deus wrote:

> Hello,
>
> When trying to obtain a full URI for certain terms using the  
> ontology widgets, I came acrros many terms that do not have a full  
> ID in the format of a URI. For example, the term "MRSA", in ontology  
> id 40397 (concept id is T4539). I have been trying to discover,  
> using the same json service that bioportal widgets use (ex: http://bioportal.bioontology.org/search/json_search/?q=T4539&response=json&callback=jsondata) 
> , but even there no full ID in the format of a URI exists.
>
> Alternativelly, I tried to get the full URI using the "concepts"  
> REST service (http://rest.bioontology.org/bioportal/concepts/40397/T4539 
> ), but this leads me to a list of terms formatted as XML. Ideally,  
> to be SPARQL compatible, I would meed this URI (or the full UID  
> within it) to return data in RDF format, is it possible? Maybe with  
> a small addition of syntax this could be achieved (ex: http://rest.bioontology.org/bioportal/concepts/40397/T4539?format=rdf) 
>  ?? I may be missing something but was unable to find in the  
> documentation how to obtain the necessary RDF representation to  
> integrate in SPARQL queries.
>
>
> Thanks
> Lena
> _______________________________________________
> bioontology-support mailing list
> bioontology-support at lists.stanford.edu
> https://mailman.stanford.edu/mailman/listinfo/bioontology-support

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