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[bioontology-support] full id vs short id in ontology terms

Helena Deus helenadeus at gmail.com
Tue May 18 09:25:58 PDT 2010


Thanks, Trish

Do you have some example queries to run on the SPARQL endpoint?

On Tue, May 18, 2010 at 5:21 PM, Trish Whetzel <whetzel at stanford.edu> wrote:

> Hi Lena,
>
> As a quick note, we are developing a *PROTOTYPE* triple store that is
> accessible at: http://sparql.bioontology.org:8080/webui. As for the other
> items, a fix has been implemented to provide the full URI via the widgets
> and I am checking to see when this will be available on the production site.
>
> Trish
>
>
> On May 18, 2010, at 9:02 AM, Helena Deus wrote:
>
> Hello,
>
> When trying to obtain a full URI for certain terms using the ontology
> widgets, I came acrros many terms that do not have a full ID in the format
> of a URI. For example, the term "MRSA", in ontology id 40397 (concept id
> is T4539). I have been trying to discover, using the same json service that
> bioportal widgets use (ex:
> http://bioportal.bioontology.org/search/json_search/?q=T4539&response=json&callback=jsondata),
> but even there no full ID in the format of a URI exists.
>
> Alternativelly, I tried to get the full URI using the "concepts" REST
> service (http://rest.bioontology.org/bioportal/concepts/40397/T4539), but
> this leads me to a list of terms formatted as XML. Ideally, to be SPARQL
> compatible, I would meed this URI (or the full UID within it) to return data
> in RDF format, is it possible? Maybe with a small addition of syntax this
> could be achieved (ex:
> http://rest.bioontology.org/bioportal/concepts/40397/T4539?format=rdf) ??
> I may be missing something but was unable to find in the documentation how
> to obtain the necessary RDF representation to integrate in SPARQL queries.
>
>
> Thanks
> Lena
> _______________________________________________
> bioontology-support mailing list
> bioontology-support at lists.stanford.edu
> https://mailman.stanford.edu/mailman/listinfo/bioontology-support
>
>
>
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