Search Mailing List Archives


Limit search to: Subject & Body Subject Author
Sort by: Reverse Sort
Limit to: All This Week Last Week This Month Last Month
Select Date Range     through    

[bioontology-support] full id vs short id in ontology terms

Trish Whetzel whetzel at stanford.edu
Tue May 18 11:14:28 PDT 2010


In addition, Web services are being developed that will return RDF for  
a term.

Trish


On May 18, 2010, at 9:21 AM, Trish Whetzel wrote:

> Hi Lena,
>
> As a quick note, we are developing a PROTOTYPE triple store that is  
> accessible at: http://sparql.bioontology.org:8080/webui. As for the  
> other items, a fix has been implemented to provide the full URI via  
> the widgets and I am checking to see when this will be available on  
> the production site.
>
> Trish
>
>
> On May 18, 2010, at 9:02 AM, Helena Deus wrote:
>
>> Hello,
>>
>> When trying to obtain a full URI for certain terms using the  
>> ontology widgets, I came acrros many terms that do not have a full  
>> ID in the format of a URI. For example, the term "MRSA", in  
>> ontology id 40397 (concept id is T4539). I have been trying to  
>> discover, using the same json service that bioportal widgets use  
>> (ex: http://bioportal.bioontology.org/search/json_search/?q=T4539&response=json&callback=jsondata) 
>> , but even there no full ID in the format of a URI exists.
>>
>> Alternativelly, I tried to get the full URI using the "concepts"  
>> REST service (http://rest.bioontology.org/bioportal/concepts/40397/T4539 
>> ), but this leads me to a list of terms formatted as XML. Ideally,  
>> to be SPARQL compatible, I would meed this URI (or the full UID  
>> within it) to return data in RDF format, is it possible? Maybe with  
>> a small addition of syntax this could be achieved (ex: http://rest.bioontology.org/bioportal/concepts/40397/T4539?format=rdf) 
>>  ?? I may be missing something but was unable to find in the  
>> documentation how to obtain the necessary RDF representation to  
>> integrate in SPARQL queries.
>>
>>
>> Thanks
>> Lena
>> _______________________________________________
>> bioontology-support mailing list
>> bioontology-support at lists.stanford.edu
>> https://mailman.stanford.edu/mailman/listinfo/bioontology-support
>
> _______________________________________________
> bioontology-support mailing list
> bioontology-support at lists.stanford.edu
> https://mailman.stanford.edu/mailman/listinfo/bioontology-support

-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://mailman.stanford.edu/pipermail/bioontology-support/attachments/20100518/7babd46c/attachment.html>


More information about the bioontology-support mailing list