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[bioontology-support] full id vs short id in ontology terms
whetzel at stanford.edu
Tue May 18 11:14:28 PDT 2010
In addition, Web services are being developed that will return RDF for
On May 18, 2010, at 9:21 AM, Trish Whetzel wrote:
> Hi Lena,
> As a quick note, we are developing a PROTOTYPE triple store that is
> accessible at: http://sparql.bioontology.org:8080/webui. As for the
> other items, a fix has been implemented to provide the full URI via
> the widgets and I am checking to see when this will be available on
> the production site.
> On May 18, 2010, at 9:02 AM, Helena Deus wrote:
>> When trying to obtain a full URI for certain terms using the
>> ontology widgets, I came acrros many terms that do not have a full
>> ID in the format of a URI. For example, the term "MRSA", in
>> ontology id 40397 (concept id is T4539). I have been trying to
>> discover, using the same json service that bioportal widgets use
>> (ex: http://bioportal.bioontology.org/search/json_search/?q=T4539&response=json&callback=jsondata)
>> , but even there no full ID in the format of a URI exists.
>> Alternativelly, I tried to get the full URI using the "concepts"
>> REST service (http://rest.bioontology.org/bioportal/concepts/40397/T4539
>> ), but this leads me to a list of terms formatted as XML. Ideally,
>> to be SPARQL compatible, I would meed this URI (or the full UID
>> within it) to return data in RDF format, is it possible? Maybe with
>> a small addition of syntax this could be achieved (ex: http://rest.bioontology.org/bioportal/concepts/40397/T4539?format=rdf)
>> ?? I may be missing something but was unable to find in the
>> documentation how to obtain the necessary RDF representation to
>> integrate in SPARQL queries.
>> bioontology-support mailing list
>> bioontology-support at lists.stanford.edu
> bioontology-support mailing list
> bioontology-support at lists.stanford.edu
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