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[bioontology-support] New Bio ontology post

Trish Whetzel whetzel at stanford.edu
Fri Oct 1 11:08:26 PDT 2010


Ok, we do have a Stage version of BioPortal that you can use for the test upload: http://stage.bioontology.org . Please note that since this is a Stage instance it may be unavailable for short periods of time or have slower responses than the production instance.

Trish 


On Oct 1, 2010, at 10:28 AM, Zack Schmidt wrote:

> Trish,
>  
> We wanted to try uploading a very small ontology to see if our Ontology format is compatible with yours.  If it is compatible and is viewable on your site then we would try uploading the entire Ontology.  
>  
>  Our approach to test whether our OWL format is compatible with yours would be to 1) upload a small Ontology to your site.  2) See if the ontology is viewable.  3) If it works we would delete the test ontology and upload the entire Ontology.
>  
> Thanks.
>  
> Zack Schmidt, MBA
>  
> <image001.jpg>
> SterlingBio Inc
> 101 Parkshore Drive Suite 100
> Folsom, CA  95630
> 916-932-2128
> Cell:  916-220-5887
> Fax:  916-244-0352
> zack at sterlingbio.com
> www.SterlingBio.com
>  
>  
> From: Trish Whetzel [mailto:whetzel at stanford.edu] 
> Sent: Friday, October 01, 2010 10:20 AM
> To: Zack Schmidt
> Subject: Re: New Bio ontology post
>  
> BioPortal supports versions of ontologies, therefore you can load a new version if there are updates to the ontology. Will that work for your use case?
>  
> Trish 
>  
>  
> On Oct 1, 2010, at 10:17 AM, Zack Schmidt wrote:
> 
> 
> I am going to upload one, but if we later find an error in it, or we need to change the ontology, can we modify it?
>  
> Thanks.
>  
> Zack Schmidt, MBA
>  
> <image001.jpg>
> SterlingBio Inc
> 101 Parkshore Drive Suite 100
> Folsom, CA  95630
> 916-932-2128
> Cell:  916-220-5887
> Fax:  916-244-0352
> zack at sterlingbio.com
> www.SterlingBio.com
>  
>  
> From: Trish Whetzel [mailto:whetzel at stanford.edu] 
> Sent: Friday, October 01, 2010 10:16 AM
> To: Zack Schmidt
> Subject: Re: New Bio ontology post
>  
> Sorry, no that is not possible. Is there an ontology you uploaded that you would like removed?
>  
> Trish
>  
>  
>  
> On Oct 1, 2010, at 8:44 AM, Zack Schmidt wrote:
> 
> 
> 
> Hi Trish,
> Is it possible for the user to delete a recently posted ontology without admin assistance through your web interface?
>  
> Thanks.
>  
> Zack Schmidt, MBA
>  
> <image001.jpg>
> SterlingBio Inc
> 101 Parkshore Drive Suite 100
> Folsom, CA  95630
> 916-932-2128
> Cell:  916-220-5887
> Fax:  916-244-0352
> zack at sterlingbio.com
> www.SterlingBio.com
>  
>  
>  
>  

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