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[bioontology-support] Fwd: Proxy error when calling text mining service

Natasha F. Noy noy at stanford.edu
Wed Oct 13 10:29:41 PDT 2010


Marco,

Forwarding this to support so that we can get more eyeballs on this. I  
myself don't know what is going on.

Natasha


Begin forwarded message:

> From: Marco Ocana <marco.ocana at balboasystems.com>
> Date: October 13, 2010 8:22:46 AM PDT
> To: "Natasha F. Noy" <noy at stanford.edu>, Trish Whetzel <whetzel at stanford.edu 
> >
> Cc: Paolo Ciccarese <paolo.ciccarese at gmail.com>
> Subject: Proxy error when calling text mining service
>
> Hi Natasha and Trish,
>
> On one of my test cases I am consistently getting an error from the  
> text mining service. I was able to reproduce it using the html form  
> at http://rest.bioontology.org/test_oba.html . Below is the text  
> from the returned web page:
>
> Proxy Error
>
> The proxy server received an invalid response from an upstream server.
> The proxy server could not handle the request POST /obs/annotator.
> Reason: Error reading from remote server
>
> To reproduce from the online form, below are the steps:
>
> 1. For ontologiesToKeepInResult:
> 42584,42801,3083,13356,39183,40009,42672,44158,42983,13352,40724,40726,36430,44005,44006,44007,39976,42277,42571,40791,44163,40133,3093,39579,39577,44169,42685,13342,42971,44133,42504,38631,42502,39966,40917,42728,40216,40688,44079,36417,44170,42925,44171,44172,44173,42920,35686,44174,44175,40546,39509,44178,42651,40872,42791,39508,13404,42860,39580,42794,40483,40117,36425,25148,42456,44182,42915,42455,42912,40802,44180,42453,42452,40223,44112,42093,42993,44113,40937,44084,44016,42525,42998,44011,39624,37911,42545,42646,8056,40764,40660,44057,42117,13397,44108,42948,29684,40245,39215,44109,39933,40865,42828,40652,39343,40651,38873,40653,42736,42737,39734,13386,42931,42932,40958,42330,44448,42835,42838,42837,40238,42834,39927,42764,42622,40832,39331,44038,40649,40648,3905,40646,42768,44036,42765,40643,40642,14391,42367,40261,39815,42820,39336,39544,39038,40844,42752,13323,42758,40984,4531,40985,42184,38801,38802,38550 
>  ,42497,4525,38366,40358,42955,39804
>
> 2. For textToAnnotate, I copied and pasted the text in attached  
> file. Note: need to open in an editor that can read UTF-8 . The test  
> for this is that you can find:  Aβ    in the document.
>
> 3. For format, xml.
>
> If this is something you can fix at your end and/or have a  
> workaround, it would be greatly appreciated.
>
> Thanks
>
> Marco
>
>
>

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