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[bioontology-support] NEMO in BioPortal

Trish Whetzel whetzel at stanford.edu
Mon Sep 20 13:36:12 PDT 2010


Hi Gwen,

Thanks for the note. We'll take a look and be in contact as needed.

Trish


On Sep 20, 2010, at 12:37 PM, Gwen Frishkoff wrote:

>
> Hi Trish!
>
> First, the good news: we have replaced URI with PURLS, following  
> your recommendation.
>
> Now for the bad news: the new version (v1.20) of NEMO.owl was  
> uploaded last Friday, but does not appear to have been parsed  
> successfully. When I click on "Explore" the ontology does not load  
> in Biportal's browser. Is there anything we can do to help  
> troubleshoot this? I did download the file I posted (NEMO_v1.20.owl)  
> and verified that I could open and view it in Protege. Let me know  
> if there's anything else that Snezana, Jason, Paea, or I can check.
>
> Thanks!
> Gwen
>
>
> Gwen Frishkoff, Ph.D.
> Assistant Professor, Department of Psychology
> Associate Member, Neuroscience Institute
> 140 Decatur Street
> Urban Life, Rm 712
> Georgia State University
> Atlanta, Georgia  30303-3083
>
> Email: gfrishkoff at gsu.edu
> Phone: 404-413-6303
> Fax:   404-413-6218
>
> "The price of training is always a certain 'trained incapacity': the  
> more we know how to do something, the harder it is to learn to do it  
> differently."
> -- A. Kaplan (The Scientific Method in Behavioral Science)
>
> Trish Whetzel wrote:
>> Great! In addition to the PURLs under the "/nemo" domain, we also  
>> generate PURLs for all ontologies in BioPortal which are under the  
>> "/ontology" domain. Therefore, the PURL http://purl.bioontology.org/ontology/nemo 
>>  can be used to point users to the Web view of NEMO in BioPortal.
>> Trish
>> On Aug 9, 2010, at 11:49 AM, Jason Sydes wrote:
>>> On Fri, Aug 6, 2010 at 6:47 PM, Trish Whetzel  
>>> <whetzel at stanford.edu> wrote:
>>> Hi Jason,
>>>
>>> Apologies for the delay. The "/nemo" domain is now approved.
>>>
>>>
>>> Great, thanks Trish! I've got it all set up now!
>>>
>>> Thanks again!
>>> Jason




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