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[bioontology-support] SIO

Natasha F. Noy noy at stanford.edu
Mon Sep 20 16:08:13 PDT 2010


It's up:
http://bioportal.bioontology.org/visualize/44510

Please let us know if you see anything amiss.

Thanks!

Natasha


On Sep 16, 2010, at 5:59 PM, Michel Dumontier wrote:

> Hi,
>  Thanks for the heads-up. The class/object property overlap is fixed.
>
> m.
>
> On Thu, Sep 16, 2010 at 6:44 PM, Natasha F. Noy <noy at stanford.edu>  
> wrote:
>> Hi Michel,
>>
>> We are having some trouble with parsing the ontology (BioPortal  
>> uses Protege
>> 3 to parse OWL ontologies). I know it looks fine in Protege 4. But  
>> you have
>> a bunch of resources (e.g., SIO_000310, SIO_000219) declared both as
>> owl:ObjectProperty and owl:Class. Is that the intent?
>>
>> Protege 3 really chokes on these :( Before we do something though,  
>> wanted to
>> make sure that this is really what you meant to say.
>>
>> Thanks in advance for clarifications!
>>
>> Natasha
>>
>>
>> On Sep 15, 2010, at 9:21 AM, Michel Dumontier wrote:
>>
>>> hello,
>>>  i would like to register a new OWL ontology termed SIO ( i have
>>> created the project description ).
>>>
>>> it is available at
>>>
>>> http://semanticscience.googlecode.com/svn/trunk/ontology/sio.owl
>>>
>>> and the bioportal file is at
>>>
>>>
>>> http://semanticscience.googlecode.com/svn/trunk/ontology/bioportal_listing.txt
>>>
>>> cheers,
>>>
>>> m.
>>>
>>> --
>>> Michel Dumontier
>>> Associate Professor of Bioinformatics
>>> Carleton University
>>> http://dumontierlab.com
>>> _______________________________________________
>>> bioontology-support mailing list
>>> bioontology-support at lists.stanford.edu
>>> https://mailman.stanford.edu/mailman/listinfo/bioontology-support
>>
>>
>
>
>
> -- 
> Michel Dumontier
> Associate Professor of Bioinformatics
> Carleton University
> http://dumontierlab.com




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