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[bioontology-support] Ontology View
whetzel at stanford.edu
Mon Sep 20 17:42:29 PDT 2010
Currently the auto-complete widget does not include the feature you
mention, however I added this as a feature request. In the interim,
you can use the View Extraction web service ( http://www.bioontology.org/wiki/index.php/View_Extraction
) to extract all children of the concept "Ethnic group" as a subtree
from SNOMED CT and then load this subtree as a View of SNOMED CT ( http://bioportal.bioontology.org/ontologies/42789#views
Details on the View Extraction web service are described here:
and therefore the corresponding URL to extract the "Ethnic group"
PS - cc'ing support at bioontology.org to log this request
On Sep 8, 2010, at 1:43 PM, Bhandare, Aniket wrote:
> Hi Trish,
> I tried using Ontology widget auto-complete dropdown for term search
> in ontology.
> I tried option "get the preferred name for a term". To do so we
> specify ontology id in the class attribute of html input tag. In my
> case, I tried it with SNOMEDCT ontology and so
> I was wondering if it's possible to limit options in a dropdown to a
> particular term. E.g. Say in my application I want to show a
> dropdown to select one of "Ethnic group" values. It’s a valid term
> in SNOMEDCT with id 372148003. So can I specify this term id along
> with ontology id in class attribute of html input tag to limit
> permissible values in dropdown? If no, is there any other way to
> accomplish this?
> Please let me know your inputs on this.
> From: Nigam Shah [mailto:nigam at stanford.edu]
> Sent: Thursday, August 26, 2010 12:15 PM
> To: Nagarajan, Rakesh
> Cc: Bhandare, Aniket; McIntosh, Leslie; Trish Whetzel
> Subject: Re: Ontology View
> Hi Rakesh, Aniket and Leslie,
> You can use any method/tool of your choice to create a view. If the
> ontology you want to create a view of is in OWL, you can use Protege
> to create the view. Once you have the view, you can upload it by
> simply going to bioportal at: http://bioportal.bioontology.org/ontologies
> and clicking on the ontology of which you have created a view. For
> example, if you create a view of the NCIT, and you click on NCIT (in
> the first column in the table at: http://bioportal.bioontology.org/ontologies)
> .. you will reach:
> http://bioportal.bioontology.org/ontologies/42838 ... go to the
> "views" tab and click on "create new view" link to submit your file.
> Trish Whetzel (cc'ed) can help if you run into any issues.
> On Thu, Aug 26, 2010 at 9:26 AM, Nagarajan, Rakesh
> <rakesh at wustl.edu> wrote:
> It was great seeing your presentation yesterday. We are
> interested in creating a view of a larger ontology one of our
> collaborators will soon load into BioPortal. Can you point Aniket/
> Leslie, CCed, to documentation on how we can do this and then load
> this view back into BioPortal?
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