Search Mailing List Archives


Limit search to: Subject & Body Subject Author
Sort by: Reverse Sort
Limit to: All This Week Last Week This Month Last Month
Select Date Range     through    

[bioontology-support] SIO

Michel Dumontier michel.dumontier at gmail.com
Mon Sep 20 20:42:46 PDT 2010


do you plan support for OWL axioms?  what about relations?

m.

On Mon, Sep 20, 2010 at 7:08 PM, Natasha F. Noy <noy at stanford.edu> wrote:
> It's up:
> http://bioportal.bioontology.org/visualize/44510
>
> Please let us know if you see anything amiss.
>
> Thanks!
>
> Natasha
>
>
> On Sep 16, 2010, at 5:59 PM, Michel Dumontier wrote:
>
>> Hi,
>>  Thanks for the heads-up. The class/object property overlap is fixed.
>>
>> m.
>>
>> On Thu, Sep 16, 2010 at 6:44 PM, Natasha F. Noy <noy at stanford.edu> wrote:
>>>
>>> Hi Michel,
>>>
>>> We are having some trouble with parsing the ontology (BioPortal uses
>>> Protege
>>> 3 to parse OWL ontologies). I know it looks fine in Protege 4. But you
>>> have
>>> a bunch of resources (e.g., SIO_000310, SIO_000219) declared both as
>>> owl:ObjectProperty and owl:Class. Is that the intent?
>>>
>>> Protege 3 really chokes on these :( Before we do something though, wanted
>>> to
>>> make sure that this is really what you meant to say.
>>>
>>> Thanks in advance for clarifications!
>>>
>>> Natasha
>>>
>>>
>>> On Sep 15, 2010, at 9:21 AM, Michel Dumontier wrote:
>>>
>>>> hello,
>>>>  i would like to register a new OWL ontology termed SIO ( i have
>>>> created the project description ).
>>>>
>>>> it is available at
>>>>
>>>> http://semanticscience.googlecode.com/svn/trunk/ontology/sio.owl
>>>>
>>>> and the bioportal file is at
>>>>
>>>>
>>>>
>>>> http://semanticscience.googlecode.com/svn/trunk/ontology/bioportal_listing.txt
>>>>
>>>> cheers,
>>>>
>>>> m.
>>>>
>>>> --
>>>> Michel Dumontier
>>>> Associate Professor of Bioinformatics
>>>> Carleton University
>>>> http://dumontierlab.com
>>>> _______________________________________________
>>>> bioontology-support mailing list
>>>> bioontology-support at lists.stanford.edu
>>>> https://mailman.stanford.edu/mailman/listinfo/bioontology-support
>>>
>>>
>>
>>
>>
>> --
>> Michel Dumontier
>> Associate Professor of Bioinformatics
>> Carleton University
>> http://dumontierlab.com
>
>



-- 
Michel Dumontier
Associate Professor of Bioinformatics
Carleton University
http://dumontierlab.com



More information about the bioontology-support mailing list