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[bioontology-support] query by URI

Trish Whetzel whetzel at stanford.edu
Thu Sep 23 17:30:07 PDT 2010


Hi Ben,

Add the includeproperties parameter with value=1 as below:
http://rest.bioontology.org/bioportal/search/?query=https%3A%2F%2Fcode.ecoinformatics.org%2Fcode%2Fsemtools%2Ftrunk%2Fdev%2Foboe%2Foboe-sbc.owl%23Kelp&includeproperties=1

Trish


On Sep 23, 2010, at 4:19 PM, ben leinfelder wrote:

> Hello,
> After quite a bit of trial and error I figured I'd break down and  
> ask about the query webservice (http://www.bioontology.org/wiki/index.php/BioPortal_REST_services#Search_BioPortal 
> )
>
> Let's say I know the entire URI of the concept I'm searching for but  
> I want to find the BioPortal ontologyId that houses that concept...
>
> I've tried using the "Alt Signature" with a URLEncoded** search  
> term, but it returns 0 matches:
> 	http://rest.bioontology.org/bioportal/search/?query=https%3A%2F%2Fcode.ecoinformatics.org%2Fcode%2Fsemtools%2Ftrunk%2Fdev%2Foboe%2Foboe-sbc.owl%23Kelp
>
> Whereas a less-precise search does locate my term ('Kelp' from the  
> OBOE SBC ontology) along with many others:
> 	http://rest.bioontology.org/bioportal/search/?query=Kelp
>
> I'm sure I'm missing some small detail.
> Thanks for suggestions,
> -ben
>
> **I've also tried using the URI Java class to encode my query term  
> as it is very much a proper URI, but this does not change the  
> behavior.
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