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[bioontology-support] Annotator help request

Marco Ocana marco.ocana at
Tue Sep 28 15:12:31 PDT 2010


My name is Marco Ocana and I am a software consultant. I work with Tim Clark 
from Harvard University/MGH.
We are working on integrating your Annotator Web Service with a tool that we are 

We encountered a problem with the results returned from the service.
Some of the URIs for the found concepts are invalid.
Below is an extract of the results. Note the ... at the end of the fullId 
element value. Same for localConceptId.

We got this result from the Java/Groovy client we are creating and from your 
HTML web form at:

To reproduce, I just entered (without quotes):
"This is a test to see if we can find breast cancer or alzheimers disease"
The only option on the web form I changed or set was XML output.


Marco Ocana
Balboa Systems, Inc.

            <preferredName>Benign tumour</preferredName>
              <string>Benign neoplasm</string>
                <description>Neoplastic Process</description>
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