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[bioontology-support] Annotator help request
Trish Whetzel
whetzel at stanford.edu
Tue Sep 28 16:23:57 PDT 2010
Dear Marco,
Thanks for pointing this out. I was able to reproduce this error directly using the Annotator web service and will investigate further.
Trish
On Sep 28, 2010, at 3:12 PM, Marco Ocana wrote:
> Hi,
>
> My name is Marco Ocana and I am a software consultant. I work with Tim Clark from Harvard University/MGH.
> We are working on integrating your Annotator Web Service with a tool that we are developing.
>
> We encountered a problem with the results returned from the service.
> Some of the URIs for the found concepts are invalid.
> Below is an extract of the results. Note the ... at the end of the fullId element value. Same for localConceptId.
>
> We got this result from the Java/Groovy client we are creating and from your HTML web form at:
> http://rest.bioontology.org/test_oba.html
>
> To reproduce, I just entered (without quotes):
> "This is a test to see if we can find breast cancer or alzheimers disease"
> The only option on the web form I changed or set was XML output.
>
> Thanks
>
> Marco Ocana
> Balboa Systems, Inc.
>
> <annotationBean>
>
> <score>7</score>
>
> <concept>
>
> <id>7576609</id>
>
> <localConceptId>42295/B7...</localConceptId>
>
> <localOntologyId>42295</localOntologyId>
>
> <isTopLevel>0</isTopLevel>
>
> <fullId>http://purl.bioontology.org/ontology/RCD/B7...</fullId>
>
> <preferredName>Benign tumour</preferredName>
>
> <synonyms>
>
> <string>Benign neoplasm</string>
>
> </synonyms>
>
> <definitions/>
>
> <semanticTypes>
>
> <semanticTypeBean>
>
> <id>10256193</id>
>
> <semanticType>T191</semanticType>
>
> <description>Neoplastic Process</description>
>
> </semanticTypeBean>
>
> </semanticTypes>
>
> </concept>
>
> _______________________________________________
> bioontology-support mailing list
> bioontology-support at lists.stanford.edu
> https://mailman.stanford.edu/mailman/listinfo/bioontology-support
Trish Whetzel, PhD
Outreach Coordinator
The National Center for Biomedical Ontology
Ph: 650-721-2378
whetzel at stanford.edu
http://www.bioontology.org
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