Search Mailing List Archives


Limit search to: Subject & Body Subject Author
Sort by: Reverse Sort
Limit to: All This Week Last Week This Month Last Month
Select Date Range     through    

[bioontology-support] mapping service

Paul R Alexander palexander at stanford.edu
Tue Apr 5 12:25:31 PDT 2011


It's not based on LexEVS as we created a solution specific to NCBO using 
a triplestore as the back-end mechanism.

I'm not sure of the plans for using LexEVS version 6, perhaps someone 
else on the support list could address that question.

Paul


On 4/5/11 12:20 PM, Madani,Sina wrote:
>
> Thanks for the fast response!
>
> Is your new comprehensive mapping solution based on the new LexEVS 
> 6.0/6.1 or is it something specific to your appliance? Do you have any 
> plan for upgrading the appliance with the new version of LexEVS?
>
> I think the new LexEVS provides inter-terminology mapping services as 
> well.
>
> Sina
>
> *From:*Paul R Alexander [mailto:palexander at stanford.edu]
> *Sent:* Tuesday, April 05, 2011 2:09 PM
> *To:* Madani,Sina
> *Cc:* support at bioontology.org Support; Lari,Bryan
> *Subject:* Re: mapping service
>
> Sina,
>
> On your version of the NCBO Appliance there is a prototype mapping 
> service, but it isn't great when dealing with a large number of 
> mappings. See the documentation [1] for examples, and you can replace 
> bioportal.bioontology.org with your machine's domain. We've recently 
> implemented a more comprehensive mapping solution but it hasn't been 
> integrated with the Appliance.
>
> Mapping data is stored in the bioportal_ui database in a table called 
> 'mappings'. The column definitions are pretty obvious if you take a look.
>
> Paul
>
> [1] 
> http://www.bioontology.org/wiki/index.php/NCBO_REST_services#Mapping_Service
>
> On 4/5/11 12:02 PM, Madani,Sina wrote:
>
> Hi Paul,
>
> I have another quick question for you :)  Do you know which table 
> stores the mapping that user can define in UI for a specific term 
> between two terminologies like the one shown below?
>
> Is this mapping accessible through service calls?
>
> Thanks as always for your great help
>
> Sina
>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://mailman.stanford.edu/pipermail/bioontology-support/attachments/20110405/cc7aaf12/attachment.html>
-------------- next part --------------
A non-text attachment was scrubbed...
Name: not available
Type: image/png
Size: 84023 bytes
Desc: not available
URL: <http://mailman.stanford.edu/pipermail/bioontology-support/attachments/20110405/cc7aaf12/attachment.png>


More information about the bioontology-support mailing list