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[bioontology-support] ontology updates

Michel Dumontier michel.dumontier at gmail.com
Tue Apr 5 19:00:27 PDT 2011


i just checked bioportal - http://bioportal.bioontology.org/visualize/45484 -
but i still don't see the rdfs:label rendering

ok, i added the property and value to the sio.owl file!

m.

On Tue, Apr 5, 2011 at 9:48 PM, Trish Whetzel <whetzel at stanford.edu> wrote:

> It is from a repository distributed with Protege. See attached screenshot.
>
> Trish
>
>
>
>
> On Apr 6, 2011, at 2:30 AM, Michel Dumontier wrote:
>
> I don't know what protege: prefix refers to in terms of a uri. there is
> also a dc:language annotation property - perhaps that would be better?
>
> m.
>
> On Tue, Apr 5, 2011 at 7:50 PM, Trish Whetzel <whetzel at stanford.edu>wrote:
>
>> Hi Michel,
>>
>> The need to set the protege:defaultLanguage is an issue that is starting
>> to occur more frequently as ontology developers are using Protege 4.x more
>> frequently. We are discussing how best to handle this, e.g. setting the
>> default language to "en" within BioPortal itself has been suggested.
>>
>> Polling - does this refer to ontology uploads? If yes, this occurs daily.
>> It looked like SIO was not set for automatic updates, but is now.
>>
>> Trish
>>
>>
>> On Apr 5, 2011, at 2:46 PM, Michel Dumontier wrote:
>>
>> Hi Trish,
>>   oh - i didn't know this - is this publicly documented ?
>>   What is the procedure for polling updates?
>>
>> Cheers!
>>
>> m.
>>
>> On Tue, Apr 5, 2011 at 4:50 AM, Trish Whetzel <whetzel at stanford.edu>wrote:
>>
>>> Hi Michel,
>>>
>>> I've confirmed that the rdfs:label is not being displayed in the tree
>>> browser since the protege:defaultLanguage needs to be included via the
>>> Metadata tab.
>>>
>>> Trish
>>>
>>>
>>> On Apr 4, 2011, at 5:27 PM, Trish Whetzel wrote:
>>>
>>> > The newest version is now loaded. The tree browser is not displaying
>>> the
>>> > rdfs:label for the term. I believe this is caused by not setting the
>>> > protege:defaultLanguage in the Metadata tab. I've created a test
>>> version and
>>> > uploaded this to our dev server to confirm.
>>> >
>>> > Trish
>>> >
>>> >
>>> > --
>>> > View this message in context:
>>> http://ncbo-support.2288202.n4.nabble.com/bioontology-support-Fwd-bioontology-info-ontology-updates-tp3422937p3425969.html
>>> > Sent from the NCBO Support mailing list archive at Nabble.com.
>>> > _______________________________________________
>>> > bioontology-support mailing list
>>> > bioontology-support at lists.stanford.edu
>>> > https://mailman.stanford.edu/mailman/listinfo/bioontology-support
>>>
>>>
>>
>>
>> --
>> Michel Dumontier
>> Associate Professor of Bioinformatics
>> Carleton University
>> http://dumontierlab.com
>>
>>
>>
>
>
> --
> Michel Dumontier
> Associate Professor of Bioinformatics
> Carleton University
> http://dumontierlab.com
>
>
>


-- 
Michel Dumontier
Associate Professor of Bioinformatics
Carleton University
http://dumontierlab.com
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