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[bioontology-support] Feedback

Trish Whetzel whetzel at stanford.edu
Wed Aug 3 17:51:31 PDT 2011


Hi Sivaram,

I'm having some difficulty opening SDO in P4 since the FMA-SDO file can not be imported. Is the attached screenshot the correct top-level hierarchy? If not, can you send a screenshot and I'll include it with the bug report. 

Trish 






On Jul 29, 2011, at 10:57 AM, Sivaram Arabandi wrote:

> Trish,
> It appears to have been parsed, but doesn't look right. Looks like only the CPR part of it got uploaded. 
> 
> --Sivaram
> 
> Sent from my iPad
> 
> On Jul 27, 2011, at 3:46 PM, Trish Whetzel <whetzel at stanford.edu> wrote:
> 
>> Yes, once it is loaded. 
>> 
>> On Jul 27, 2011, at 3:30 PM, Sivaram Arabandi, MD wrote:
>> 
>>> Great! Is it possible for me to take a look at the staging area? 
>>> 
>>> --Sivaram
>>> 
>>> On Jul 27, 2011, at 2:42 PM, Trish Whetzel wrote:
>>> 
>>>> Thanks - I added this into the tracker, it's up to our project manager to take it from here. 
>>>> 
>>>> On Jul 27, 2011, at 1:38 PM, Sivaram Arabandi, MD wrote:
>>>> 
>>>>> Here it is ...
>>>>> 
>>>>> <SDO.zip>
>>>>> 
>>>>> Please let me know if this works.
>>>>> 
>>>>> thanks,
>>>>> Sivaram
>>>>> 
>>>>> On Jul 27, 2011, at 1:26 PM, Trish Whetzel wrote:
>>>>> 
>>>>>> Thanks, our sysadmin reports that the files were uploaded. Can you send the ZIP file offlist so we can do some testing on our staging server?
>>>>>> 
>>>>>> Yes, I'm here at ICBO. Look forward to catching up! 
>>>>>> 
>>>>>> Trish 
>>>>>> 
>>>>>> On Jul 27, 2011, at 1:24 PM, Sivaram Arabandi wrote:
>>>>>> 
>>>>>>> Hi Trish,
>>>>>>> Remember, we tried to upload a version a few months back? Anyway, this is a bit more cleaned up.
>>>>>>> 
>>>>>>> BTW, are you here at ICBO?
>>>>>>> 
>>>>>>> cheers,
>>>>>>> Sivaram
>>>>>>> ____________________________
>>>>>>> Sivaram Arabandi, MD, MS
>>>>>>> Ph:  216.374.2883
>>>>>>> 
>>>>>>> http://ontolog.cim3.net/cgi-bin/wiki.pl?SivaramArabandi
>>>>>>> http://www.linkedin.com/pub/sivaram-arabandi/1/9ab/92a
>>>>>>> 
>>>>>>> Sent from my iPad
>>>>>>> 
>>>>>>> On Jul 27, 2011, at 10:29 AM, Trish Whetzel <whetzel at stanford.edu> wrote:
>>>>>>> 
>>>>>>>> Hi Sivaram,
>>>>>>>> 
>>>>>>>> It sounds like there might be a permissions issue on the directory. I'll check with the sysadmin about this. Was a previous version of SDO uploaded? 
>>>>>>>> 
>>>>>>>> Trish 
>>>>>>>> 
>>>>>>>> 
>>>>>>>> On Jul 27, 2011, at 9:53 AM, support at bioontology.org wrote:
>>>>>>>> 
>>>>>>>>> Name : Sivaram Arabandi
>>>>>>>>> 
>>>>>>>>> Email : sivaram.arabandi at gmail.com
>>>>>>>>> 
>>>>>>>>> Comment:
>>>>>>>>> Tried submitting the Sleep Domain Ontology - uploaded a zip file with the main owl file and the imports. Resulted in an error - 
>>>>>>>>> java.io.FileNotFoundException: /apps/ncbo/bioportal_resources/uploads/1650/1 (Is a directory)
>>>>>>>>> 
>>>>>>>>> Would like to have assistance with this submission.
>>>>>>>>> 
>>>>>>>>> thanks,
>>>>>>>>> Sivaram
>>>>>>>>> _______________________________________________
>>>>>>>>> bioontology-support mailing list
>>>>>>>>> bioontology-support at lists.stanford.edu
>>>>>>>>> https://mailman.stanford.edu/mailman/listinfo/bioontology-support
>>>>>>>> 
>>>>>> 
>>>>> 
>>>> 
>>> 
>> 
> 

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