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[bioontology-support] Feedback

Trish Whetzel whetzel at stanford.edu
Thu Aug 4 19:03:55 PDT 2011


Thanks for the information.

Trish 


On Aug 4, 2011, at 6:39 PM, Sivaram Arabandi, MD wrote:

> Hi Trish,
> It doesn't look right. I am having the same difficulty - something that I did not have before. I can load the FMA-SDO file by itself without any issues but throughs an error when loading it during the SDO import process. Not sure what's going on. I will try and debug this and get back to you.  
> 
> thanks,
> Sivaram
> 
> On Thu, Aug 4, 2011 at 6:21 AM, Trish Whetzel <whetzel at stanford.edu> wrote:
> Hi Sivaram,
> 
> I'm having some difficulty opening SDO in P4 since the FMA-SDO file can not be imported. Is the attached screenshot the correct top-level hierarchy? If not, can you send a screenshot and I'll include it with the bug report. 
> 
> Trish 
> 
> <sdo-roots.tiff>
> 
> 
> 
> 
> On Jul 29, 2011, at 10:57 AM, Sivaram Arabandi wrote:
> 
>> Trish,
>> It appears to have been parsed, but doesn't look right. Looks like only the CPR part of it got uploaded. 
>> 
>> --Sivaram
>> 
>> Sent from my iPad
>> 
>> On Jul 27, 2011, at 3:46 PM, Trish Whetzel <whetzel at stanford.edu> wrote:
>> 
>>> Yes, once it is loaded. 
>>> 
>>> On Jul 27, 2011, at 3:30 PM, Sivaram Arabandi, MD wrote:
>>> 
>>>> Great! Is it possible for me to take a look at the staging area? 
>>>> 
>>>> --Sivaram
>>>> 
>>>> On Jul 27, 2011, at 2:42 PM, Trish Whetzel wrote:
>>>> 
>>>>> Thanks - I added this into the tracker, it's up to our project manager to take it from here. 
>>>>> 
>>>>> On Jul 27, 2011, at 1:38 PM, Sivaram Arabandi, MD wrote:
>>>>> 
>>>>>> Here it is ...
>>>>>> 
>>>>>> <SDO.zip>
>>>>>> 
>>>>>> Please let me know if this works.
>>>>>> 
>>>>>> thanks,
>>>>>> Sivaram
>>>>>> 
>>>>>> On Jul 27, 2011, at 1:26 PM, Trish Whetzel wrote:
>>>>>> 
>>>>>>> Thanks, our sysadmin reports that the files were uploaded. Can you send the ZIP file offlist so we can do some testing on our staging server?
>>>>>>> 
>>>>>>> Yes, I'm here at ICBO. Look forward to catching up! 
>>>>>>> 
>>>>>>> Trish 
>>>>>>> 
>>>>>>> On Jul 27, 2011, at 1:24 PM, Sivaram Arabandi wrote:
>>>>>>> 
>>>>>>>> Hi Trish,
>>>>>>>> Remember, we tried to upload a version a few months back? Anyway, this is a bit more cleaned up.
>>>>>>>> 
>>>>>>>> BTW, are you here at ICBO?
>>>>>>>> 
>>>>>>>> cheers,
>>>>>>>> Sivaram
>>>>>>>> ____________________________
>>>>>>>> Sivaram Arabandi, MD, MS
>>>>>>>> Ph:  216.374.2883
>>>>>>>> 
>>>>>>>> http://ontolog.cim3.net/cgi-bin/wiki.pl?SivaramArabandi
>>>>>>>> http://www.linkedin.com/pub/sivaram-arabandi/1/9ab/92a
>>>>>>>> 
>>>>>>>> Sent from my iPad
>>>>>>>> 
>>>>>>>> On Jul 27, 2011, at 10:29 AM, Trish Whetzel <whetzel at stanford.edu> wrote:
>>>>>>>> 
>>>>>>>>> Hi Sivaram,
>>>>>>>>> 
>>>>>>>>> It sounds like there might be a permissions issue on the directory. I'll check with the sysadmin about this. Was a previous version of SDO uploaded? 
>>>>>>>>> 
>>>>>>>>> Trish 
>>>>>>>>> 
>>>>>>>>> 
>>>>>>>>> On Jul 27, 2011, at 9:53 AM, support at bioontology.org wrote:
>>>>>>>>> 
>>>>>>>>>> Name : Sivaram Arabandi
>>>>>>>>>> 
>>>>>>>>>> Email : sivaram.arabandi at gmail.com
>>>>>>>>>> 
>>>>>>>>>> Comment:
>>>>>>>>>> Tried submitting the Sleep Domain Ontology - uploaded a zip file with the main owl file and the imports. Resulted in an error - 
>>>>>>>>>> java.io.FileNotFoundException: /apps/ncbo/bioportal_resources/uploads/1650/1 (Is a directory)
>>>>>>>>>> 
>>>>>>>>>> Would like to have assistance with this submission.
>>>>>>>>>> 
>>>>>>>>>> thanks,
>>>>>>>>>> Sivaram
>>>>>>>>>> _______________________________________________
>>>>>>>>>> bioontology-support mailing list
>>>>>>>>>> bioontology-support at lists.stanford.edu
>>>>>>>>>> https://mailman.stanford.edu/mailman/listinfo/bioontology-support
>>>>>>>>> 
>>>>>>> 
>>>>>> 
>>>>> 
>>>> 
>>> 
>> 
> 
> 

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