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[bioontology-support] Three things

Ray Fergerson ray.fergerson at stanford.edu
Wed Aug 10 17:28:18 PDT 2011


Alan,

We believe that we have fixed the processing of the metrics for OBO 
ontologies and that the numbers visible in production for "classes with no 
definition" are now correct. Please let us know if this turns out to not be 
the case.

Ray

> -----Original Message-----
> From: bioontology-support-bounces at lists.stanford.edu
> [mailto:bioontology-support-bounces at lists.stanford.edu] On Behalf Of
> Alan Ruttenberg
> Sent: Sunday, July 17, 2011 7:35 AM
> To: Trish Whetzel
> Cc: support at bioontology.org Support
> Subject: Re: [bioontology-support] Three things
>
> Doesn't appear to me - I don't see the administrative tab.
>
> Do you plan to respond to the other issues I raised?
>
> -Alan
>
>
> On Sun, Jul 17, 2011 at 9:34 AM, Trish Whetzel <whetzel at stanford.edu>
> wrote:
> > Your account "alanruttenberg" is set to manage IAO. The BioPortal
> PURL is currently set-up to resolve to the visualization of the latest
> version of the ontology.
> >
> > Trish
> >
> >
> > On Jul 11, 2011, at 6:58 PM, Alan Ruttenberg wrote:
> >
> >> 1) Can you please refrain from showing metrics on existing
> ontologies
> >> that have not updated their metadata, or to include a disclaimer
> >> warning that the metrics may not be valid. I have looked now at
> IAO's
> >> page and find once again that the metrics are bogus. I have noted
> >> this before and am surprised that no action was taken considering
> the
> >> importance the Bioportal team must give to presenting accurate
> >> metrics, not to mention the potential damage to the reputations of
> >> the ontology developers who the Bioportal aims to support.
> >>
> >> 2) Can you include some information on the details page identifying
> >> the party able to edit the summary? I don't know what account it is
> >> under - I have tried two likely candidates now and neither works -
> my
> >> own "alanruttenberg" and the obi account
> >> "ontology.bio.investigations". In the case of IAO can you please let
> >> me know which account has management ability?
> >>
> >> 3) Can you clarify what the bioportal PURL is? Apparently it leads
> to
> >> the ability to explore the current version. In that case it should
> be
> >> labeled as such: "Link to visualize" or "Bioportal visualization
> purl"
> >> or somesuch. In addition, the ontology IRI and version IRI (you
> know,
> >> the IRI's that the OWL spec considers normative  -
> >> http://www.w3.org/TR/2009/REC-owl2-syntax-
> 20091027/#Ontology_IRI_and_
> >> Version_IRI) should be given more prominence so as not to mislead.
> >>
> >> Thanks,
> >> Alan
> >> _______________________________________________
> >> bioontology-support mailing list
> >> bioontology-support at lists.stanford.edu
> >> https://mailman.stanford.edu/mailman/listinfo/bioontology-support
> >
> >



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