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[bioontology-support] CPT loading error

Kanjamala, Pradip P. Kanjamala.Pradip at
Wed Dec 14 13:23:26 PST 2011

Hi Sina,

The second error that you got after setting the target terminology value
seems to indicate that the actual load of the RRF ontology completed
successfully but there was an error in the ontology metric computation

The metric computation bugs have been fixed in subsequent BioPortal
releases. Since the metric computation may be something that you can
live without, I would check to see if the ontology is in status 3 using
BioPortal's ontology rest service. You could also look at the
lexgrid/LexBIG_load_log.txt in the tomcat logs folder for information
about the RRF load. A message at the end that says Load completed
successfully means that the rrf load was successfully loaded into the
LexEVS backend.





From: Paul R Alexander [mailto:palexander at] 
Sent: Wednesday, December 14, 2011 1:59 PM
To: Madani,Sina; support at Support; Kanjamala, Pradip P.
Subject: Re: CPT loading error



Pradip generally handles RRF loading. I'm CCing him and the support list
to see if we can get clarification on your issue.

Paul R Alexander
Web / UI Developer
NCBO BioPortal
Stanford Center for Biomedical Informatics Research

On 12/14/11 11:50 AM, Madani,Sina wrote: 

Hi Paul, 


do you happen to know what these error codes refering to? I am trying to
parse CPT that I loaded in RRF format. I am using the old Bioportal


at first I left Target Terminologies bland since my subset was only CPT
and I got the error below during parsing 







Then I put CPT in the target terminology field but got a different error
during parsing process










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