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[bioontology-support] Status of imports and Bioportal

Alan Ruttenberg alanruttenberg at gmail.com
Mon Jul 11 10:03:41 PDT 2011


How does bioportal handle imports in OWL ontologies. The standard
distribution of IAO is a small file that imports components (see
below). How should this be uploaded to BioPortal? If a URL to this is
given, will the imported ontologies also be loaded?

Can we have another option for uploading a new ontology:
Load from URL (this version will be loaded once)  <refresh>

Where the refresh button will cause the URL to be loaded again and
replace the current version?

OBO Foundry and other ontologies developed according to the OWL 2 spec
will have version IRIs that are stable for specific versions and it
would be appropriate to be able to load a single version from one of
those URIs.

Thanks,
Alan




<?xml version="1.0"?>
<rdf:RDF
    xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
    xmlns:owl="http://www.w3.org/2002/07/owl#"
    xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
    xmlns:protege="http://protege.stanford.edu/plugins/owl/protege#"
    xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
  xml:base="http://purl.obolibrary.org/obo/">
  <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/iao.owl">
    <rdfs:seeAlso>
      <owl:Thing
rdf:about="http://code.google.com/p/information-artifact-ontology/"/>
    </rdfs:seeAlso>
    <owl:versionInfo xml:lang="en">2011-05-09</owl:versionInfo>
    <owl:versionIRI
xml:lang="en">http://purl.obolibrary.org/obo/iao/2011-05-09/iao.owl</owl:versionIRI>
    <rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string"
    >An information artifact is, loosely, a dependent continuant or
its bearer that is created as the result of one or more intentional
processes. Examples: uniprot, the english language, the contents of
this document or a printout of it, the temperature measurements from a
weather balloon. For more information, see the project home page at
http://code.google.com/p/information-artifact-ontology/</rdfs:comment>
    <owl:imports
rdf:resource="http://purl.obolibrary.org/obo/iao/2011-05-09/obsolete.owl"/>
    <owl:imports
rdf:resource="http://purl.obolibrary.org/obo/iao/2011-05-09/iao-main.owl"/>
    <owl:imports
rdf:resource="http://purl.obolibrary.org/obo/iao/2011-05-09/externalDerived.owl"/>
    <owl:imports
rdf:resource="http://purl.obolibrary.org/obo/iao/2011-05-09/external.owl"/>
    <owl:imports
rdf:resource="http://purl.obolibrary.org/obo/iao/2011-05-09/externalByHand.owl"/>
    <owl:imports><owl:Ontology
rdf:about="http://www.obofoundry.org/ro/ro.owl"/></owl:imports>
    <owl:imports
rdf:resource="http://purl.obolibrary.org/obo/iao/2011-05-09/ontology-metadata.owl"/>
    <owl:imports
rdf:resource="http://protege.stanford.edu/plugins/owl/dc/protege-dc.owl"/>
    <owl:imports rdf:resource="http://www.ifomis.org/bfo/1.1"/>
    <protege:defaultLanguage
rdf:datatype="http://www.w3.org/2001/XMLSchema#string">en</protege:defaultLanguage>
  </owl:Ontology>
</rdf:RDF>



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