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[bioontology-support] Loading Issues in BioPortal

Trish Whetzel whetzel at stanford.edu
Fri Jun 3 20:08:34 PDT 2011


Hi James,

To add, I have manually pulled the latest version of EFO.  

Trish

On Jun 3, 2011, at 5:40 PM, "Ray Fergerson" <ray.fergerson at stanford.edu> wrote:

> James,
> 
> Yes we have temporarily turned off the automatic update mechanism to deal
> with other problems. We hope to re-enable it soon (end of next week).
> 
> Sorry for the confusion this has caused.
> 
> The commonly-reported metrics problem has been fixed with a patch which
> went our earlier this week. 
> 
> Ray
> 
>> -----Original Message-----
>> From: bioontology-support-bounces at lists.stanford.edu
>> [mailto:bioontology-support-bounces at lists.stanford.edu] On Behalf Of
>> James Malone
>> Sent: Wednesday, June 01, 2011 1:57 AM
>> To: support at bioontology.org Support
>> Subject: [bioontology-support] Loading Issues in BioPortal
>> 
>> Hi,
>> 
>> It appears the mechanism which is loading ontologies automatically into
>> BioPortal is broken (at least for EFO).
>> 
>> http://bioportal.bioontology.org/ontologies/39885
>> 
>> The Versions part is out of date as we had a release in May and this is
>> not showing (note nothing on our side has changed regarding releasing
>> to
>> sourceforge). In addition, it appears to be loading the same ontology
>> many times over (2.12.1) when this has not changed and similarly
>> version
>> 2.12.
>> 
>> Also, I know many people (including myself) reported the error with the
>> metrics on the page - can we please remove this while you are working
>> on
>> it as it still displays incorrect measures of the project? I'd rather
>> it
>> said nothing than something that is incorrect.
>> 
>> Many thanks,
>> 
>> James
>> 
>> 
>> --
>> European Bioinformatics Institute,
>> Wellcome Trust Genome Campus,
>> Cambridge, CB10 1SD,
>> United Kingdom
>> Tel: + 44 (0) 1223 494 676
>> Fax: + 44 (0) 1223 494 468
>> 
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>> bioontology-support mailing list
>> bioontology-support at lists.stanford.edu
>> https://mailman.stanford.edu/mailman/listinfo/bioontology-support
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