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[bioontology-support] Loading Issues in BioPortal

James Malone malone at ebi.ac.uk
Sat Jun 4 01:38:40 PDT 2011


That's great, thanks Trish.

James


> Hi James,
>
> To add, I have manually pulled the latest version of EFO.
>
> Trish
>
> On Jun 3, 2011, at 5:40 PM, "Ray Fergerson" <ray.fergerson at stanford.edu>
> wrote:
>
>> James,
>>
>> Yes we have temporarily turned off the automatic update mechanism to
>> deal
>> with other problems. We hope to re-enable it soon (end of next week).
>>
>> Sorry for the confusion this has caused.
>>
>> The commonly-reported metrics problem has been fixed with a patch which
>> went our earlier this week.
>>
>> Ray
>>
>>> -----Original Message-----
>>> From: bioontology-support-bounces at lists.stanford.edu
>>> [mailto:bioontology-support-bounces at lists.stanford.edu] On Behalf Of
>>> James Malone
>>> Sent: Wednesday, June 01, 2011 1:57 AM
>>> To: support at bioontology.org Support
>>> Subject: [bioontology-support] Loading Issues in BioPortal
>>>
>>> Hi,
>>>
>>> It appears the mechanism which is loading ontologies automatically into
>>> BioPortal is broken (at least for EFO).
>>>
>>> http://bioportal.bioontology.org/ontologies/39885
>>>
>>> The Versions part is out of date as we had a release in May and this is
>>> not showing (note nothing on our side has changed regarding releasing
>>> to
>>> sourceforge). In addition, it appears to be loading the same ontology
>>> many times over (2.12.1) when this has not changed and similarly
>>> version
>>> 2.12.
>>>
>>> Also, I know many people (including myself) reported the error with the
>>> metrics on the page - can we please remove this while you are working
>>> on
>>> it as it still displays incorrect measures of the project? I'd rather
>>> it
>>> said nothing than something that is incorrect.
>>>
>>> Many thanks,
>>>
>>> James
>>>
>>>
>>> --
>>> European Bioinformatics Institute,
>>> Wellcome Trust Genome Campus,
>>> Cambridge, CB10 1SD,
>>> United Kingdom
>>> Tel: + 44 (0) 1223 494 676
>>> Fax: + 44 (0) 1223 494 468
>>>
>>> _______________________________________________
>>> bioontology-support mailing list
>>> bioontology-support at lists.stanford.edu
>>> https://mailman.stanford.edu/mailman/listinfo/bioontology-support
>> _______________________________________________
>> bioontology-support mailing list
>> bioontology-support at lists.stanford.edu
>> https://mailman.stanford.edu/mailman/listinfo/bioontology-support
>


-- 
European Bioinformatics Institute,
Wellcome Trust Genome Campus,
Hinxton,
Cambridge, CB10 1SD,
United Kingdom
Tel: + 44 (0) 1223 494 676
Fax: + 44 (0) 1223 492 468




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