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[bioontology-support] error?

Eric Deutsch edeutsch at systemsbiology.org
Fri Jun 17 20:49:02 PDT 2011


Hi Trish, I just tried it and it works fine, now, thanks!



Eric





*From:* Trish Whetzel [mailto:whetzel at stanford.edu]
*Sent:* Friday, June 17, 2011 5:09 PM
*To:* Eric Deutsch
*Cc:* support at bioontology.org; Eric Deutsch
*Subject:* Re: error?



What browser and version are you using? I'm not able to reproduce the issue
with the link: http://bioportal.bioontology.org/ontologies?filter=PSI with
Mac/Firefox.



Also, the issue from yesterday regarding expanding the child terms through
the Web interface is now resolved.



Trish





On Jun 16, 2011, at 10:22 PM, Eric Deutsch wrote:



Hi Trish, I can’t even get any terms to show up starting from:



http://bioportal.bioontology.org/ontologies?filter=PSI



It’s not a huge deal, but I kind of like the interface, but there’s always
OLS. I was also having trouble with OBO-Edit. I was just thinking of linking
into BioPortal from the mzML and TraML development pages, but I’ll wait
until it’s working. No rush, really, I’m on vacation next week.



Cheers,

Eric





*From:* Trish Whetzel [mailto:whetzel at stanford.edu]
*Sent:* Thursday, June 16, 2011 12:13 PM
*To:* Eric Deutsch
*Cc:* Eric Deutsch; support at bioontology.org Support
*Subject:* Re: error?



Hi Eric,



The top-level of the Mass Spectrometry ontology can now be visualized, but
there are child terms that can not be expanded to visualize within the Web
interface. I have reported this error for the developers to investigate
further. The child terms are available via the Web services [1], e.g.
http://rest.bioontology.org/bioportal/virtual/leafpath/1105/MS:1000881



Can you provide information on how critical this error is to your project to
prioritize this item, e.g. is this a complete blocker to your work?



Trish



[1]
http://www.bioontology.org/wiki/index.php/NCBO_REST_services#Get_paths_to_root.2Fleaves_from_a_concept_in_the_latest_version_of_a_given_ontology






On Jun 16, 2011, at 8:25 AM, Eric Deutsch wrote:



Hi Trish, I suppose you know about this, but in case not..



<image001.png>



The “issue” appears two days old now?
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