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[bioontology-support] Request search/json_search Documentation &

Trish Whetzel whetzel at stanford.edu
Mon Jun 20 16:59:30 PDT 2011


> 1. I am using the following request to get ifnromation about an concept
> Diabetes Mellitus:   http://rest.bioontology.org/bioportal/virtual/ontology/1353?conceptid=73211009
>  
> They work fine, however when I try to get the information in RDF it seams that I am doing something wrong. Given the example at
> http://rest.bioontology.org/bioportal/virtual/rdf/1353/73211009
> 
> Just return a few relation in comparison with the first one. Is there anyway to specify other relation in the result?
> 
The prototype RDF Web service is not designed to return all information for a concept, but should include the essential information. 


> 2. Is there any documentation about how to use bioportal with a JSON result format? or do you have any draft reference?
>  
> I notice that the widgets use this type of GET request
>  
> http://bioportal.bioontology.org/search/json_search/1353?q=mellitu&input=%5Bobject%20HTMLInputElement%5D&target_property=uri&subtreerootconceptid=&includedefinitions=&response=json&callback=jsonp1308420960877 

We currently do not have any documentation on using the Web services with JSON result format. 


> 3.  I am trying to Get the path between two terms using the example available at:
> http://www.bioontology.org/wiki/index.php/BioPortal_REST_services#Get_a_path_between_two_terms
>  
> But the example http://rest.bioontology.org/bioportal/path/42838/?source=Transitional_Epithelium&target=Tissue&apikey=YourAPIKey Returns an error.

This has been reported as a bug.

Trish 




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