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[bioontology-support] error in NCBO rest service

Trish Whetzel whetzel at stanford.edu
Thu Jun 23 15:50:12 PDT 2011


Dear Brig, 

Can you provide an example of a term that should be returned as a leaf node but is not in the web service results?

Trish 


On Jun 23, 2011, at 2:55 PM, Brig Mecham wrote:

> Hello,
> 
> I'm trying to use your rest API services to download the path from the concept id fma:Anatomical_structure to all of its leaves.  I use the following command.
> 
> http://rest.bioontology.org/bioportal/virtual/leafpath/1053/fma:Anatomical_structure?apikey=2fa8f36b-0ea9-4000-8da8-117d63102067
> 
> This call results in a file with 5,008 rows, the last of which corresponds to the concept:
> 
> fma:Autosome.fma:Chromosome.fma:Cell_component.fma:Cardinal_cell_part
> 
> The problem  is there are many more leaves that are beneath fma:Anatomical_structure.  I figured there was a limit variable that needed to be passed via the URL and found a description of this here:
> 
> Unfortunately, adding the limit variable as shown below does not download more (or less when I set it to something like 5) terms.  
> 
> http://rest.bioontology.org/bioportal/virtual/leafpath/1053/fma:Anatomical_structure?apikey=2fa8f36b-0ea9-4000-8da8-117d63102067&limit=50000
> 
> Am I missing something or does this call not work properly?
> 
> 
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