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[bioontology-support] Fwd: HAO in BioPortal

Trish Whetzel whetzel at stanford.edu
Tue Mar 15 18:16:27 PDT 2011


I'll need to load it in Protege, but at first glance the hierarchy does not look correct on Stage.

Trish


On Mar 15, 2011, at 6:09 PM, Paul R Alexander wrote:

> I just submitted a new version for this using OWL and the new URL on stage, seems to work fine:
> http://stage.bioontology.org/visualize/45385
> 
> Let me know if I should do the same in prod.
> 
> Paul
> 
> 
> On 3/15/11 10:50 AM, Natasha Noy wrote:
>> So, that's easy then. We just need to change the primary format for this one. Unless they specifically request, I wouldn't even bother with having the OBO file as a view.
>> 
>> Natasha
>> 
>> 
>> 
>> Begin forwarded message:
>> 
>>> From: Jim Balhoff<balhoff at nescent.org>
>>> Date: March 15, 2011 10:45:57 AM PDT
>>> To: Trish Whetzel<whetzel at stanford.edu>
>>> Cc: Matt Yoder<diapriid at gmail.com>, support at bioontology.org
>>> Subject: Re: [bioontology-support] HAO in BioPortal
>>> 
>>> Hi Trish,
>>> 
>>> Yes, please use the OWL file. We will also be producing an OBO file alongside that one, but the OWL file is the primary version.
>>> 
>>> Thanks,
>>> Jim
>>> 
>>> 
>>> On Mar 15, 2011, at 12:57 PM, Trish Whetzel wrote:
>>> 
>>>> Hi Jim,
>>>> 
>>>> Is OWL now the primary representation format for HAO?
>>>> 
>>>> Trish
>>>> 
>>>> 
>>>> On Mar 14, 2011, at 7:29 AM, Jim Balhoff wrote:
>>>> 
>>>>> Hi,
>>>>> 
>>>>> We are now producing an OWL version of the Hymenoptera Anatomy Ontology (HAO). Could you update BioPortal to retrieve the ontology from http://purl.obolibrary.org/obo/hao.owl ? Currently BioPortal is using our OBO format, conversion of which is resulting in "Full Id"s which don't match the URIs used in the OWL file.
>>>>> 
>>>>> Best regards,
>>>>> Jim Balhoff
>>>>> 
>>>>> ____________________________________________
>>>>> James P. Balhoff, Ph.D.
>>>>> National Evolutionary Synthesis Center
>>>>> 2024 West Main St., Suite A200
>>>>> Durham, NC 27705
>>>>> USA
>>>>> 
>>>>> _______________________________________________
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