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[bioontology-support] [POSSIBLE VIRUS:###] Re: Feedback

Stephan Schurer PhD stephan.schurer at
Wed Mar 16 14:10:18 PDT 2011

Hallo Trish - thank you. But there is an error in the visualization.
If you download the ontology and open it in Protege it is correct.
Specifically the class 'percent viability' must not be at the root,
but under 'bioassay component' > endpoint > response.
And the class bioassay in missing from the root.
Another issue is that the imported / linked external classes from GO
and NCBO are shown by ID, and not the label. Again in Protege I see
the label, which would be much easier to users.

I can re-upload the file, but not sure if this will change anything.

I also see a root level class for all disjoint classes and
individuals, but this is not wrong.

I ask Uma to look for other potential errors.

Do you know what is going on; can you please help. I include the
uploaded file here, but even if you download the file from NCBO and
open in protege it is shown correct.



On Wed, Mar 16, 2011 at 4:42 PM, Trish Whetzel <whetzel at> wrote:
> Sure, the owl/xml uploaded entry is removed and the new upload of BAO has finished parsing and can now be explored.
> Trish
> On Mar 16, 2011, at 11:45 AM, Stephan Schurer PhD wrote:
>> Hallo Trish,
>> Just uploaded rdf/xml. It is the same ontology version, but there is
>> now a duplicate entry for BAO:
>> Can you remove the one where the explore link gives an error.
>> Thanks,
>> Stephan
>> On Wed, Mar 16, 2011 at 2:10 PM, Trish Whetzel <whetzel at> wrote:
>>> Yes rdf/xml.
>>> Trish
>>> On Mar 16, 2011, at 11:01 AM, support at wrote:
>>>> Name : Stephan Schurer
>>>> Email : sschurer at
>>>> Comment:
>>>> BioAssay Ontology Cannot be explored, i.e. gives an error message.
>>>> I uploaded as owl / xml. Should I re-up load as rdf / xml?
>>>> Please advise.
>>>> Thanks,
>>>> Stephan
>>>> _______________________________________________
>>>> bioontology-support mailing list
>>>> bioontology-support at
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