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[bioontology-support] tokenization function in Annotator?

Leyla Jael Garcia Castro lj_garcia at
Mon Oct 31 03:07:03 PDT 2011

Hi Yannick, 

There is a parameter wholeWordOnlyI guess that could do the trick but you could also have more annotations that you are looking for. Maybe give it a try and see whether it gives you what you need.


From: Yannick Pouliot PhD <ypouliot at>
To: support at
Sent: Sunday, October 30, 2011 10:58 PM
Subject: [bioontology-support] tokenization function in Annotator?

Howdy.  The Annotator doesn’t recognize the term “heparinized” but does recognize “heparin”. Q: Is there a function I can invoke to ask for tokenization (i.e., removal of parts of terms associated with plurals, adjectives, etc) when invoking the Annotator via REST?
Yannick Pouliot, PhD MBA
Bioinformatics Specialist
Butte Laboratory
Division of Systems Medicine
Room X-147, MSOB
Stanford University School of Medicine
ypouliot at
bioontology-support mailing list
bioontology-support at
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