Search Mailing List Archives


Limit search to: Subject & Body Subject Author
Sort by: Reverse Sort
Limit to: All This Week Last Week This Month Last Month
Select Date Range     through    

[bioontology-support] tokenization function in Annotator?

Yannick Pouliot PhD ypouliot at stanford.edu
Mon Oct 31 09:09:59 PDT 2011





From: Leyla Jael Garcia Castro [mailto:lj_garcia at yahoo.com]
Sent: Monday, October 31, 2011 3:07 AM
To: Yannick Pouliot PhD; support at bioontology.org
Subject: Re: [bioontology-support] tokenization function in Annotator?



Hi Yannick,



There is a parameter wholeWordOnly I guess that could do the trick but you 
could also have more annotations that you are looking for. Maybe give it a 
try and see whether it gives you what you need.



Thx, I did notice that parameter but I believe it will likely introduce more 
noise because it is not a selective truncation as is done with tokenization.



Q: I’m pretty sure that you’ve got a tokenization function in your parser (I 
forget its name). If true, any chance of implementing it?



Thx again,



Y



LJ



  _____

From: Yannick Pouliot PhD <ypouliot at stanford.edu>
To: support at bioontology.org
Sent: Sunday, October 30, 2011 10:58 PM
Subject: [bioontology-support] tokenization function in Annotator?

Howdy.  The Annotator doesn’t recognize the term “heparinized” but does 
recognize “heparin”. Q: Is there a function I can invoke to ask for 
tokenization (i.e., removal of parts of terms associated with plurals, 
adjectives, etc) when invoking the Annotator via REST?



Thx,



Yannick



____________________
Yannick Pouliot, PhD MBA
Bioinformatics Specialist

Butte Laboratory
Division of Systems Medicine

Room X-147, MSOB
Stanford University School of Medicine
 <mailto:ypouliot at stanford.edu> ypouliot at stanford.edu

 <http://www.linkedin.com/in/ypouliot> http://www.linkedin.com/in/ypouliot




_______________________________________________
bioontology-support mailing list
bioontology-support at lists.stanford.edu
https://mailman.stanford.edu/mailman/listinfo/bioontology-support



-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://mailman.stanford.edu/pipermail/bioontology-support/attachments/20111031/daee0043/attachment-0001.html>


More information about the bioontology-support mailing list