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[bioontology-support] [BioPortal] Ontology for Biomedical Investigations Parsing Failed

Trish Whetzel whetzel at stanford.edu
Thu Apr 5 13:39:09 PDT 2012


Hi Jie, 

Yes, the issue is being reviewed. A ClassCastException error was found. I don't yet have more details on what needs to be done to resolve the issue.

Trish 


On Apr 5, 2012, at 1:08 PM, Jie Zheng wrote:

> Is anyone in charge of the parsing error issue of OBI? Any issue we need to fix in the submitted ontology?
> 
> Thanks,
> 
> Jie
> 
> On 4/2/2012 10:39 AM, Jie Zheng wrote:
>> Hi,
>> 
>> The new version of OBI uploaded on March 30 is the version that imports BFO 2.0 (prerelease) (http://purl.obolibrary.org/obo/bfo.owl) which has problem to be opened by Protege 3.4. The one uploaded on April 1 merged BFO to OBI. It is no problem to be opened using Protege v3.4 and Protege v4.1. Reasoning using Hermit on Protege 4.1 works fine as well. Please let me know if you find any issue.
>> 
>> Thanks,
>> 
>> Jie
>> 
>> On 4/2/2012 2:34 AM, support at bioontology.org wrote:
>>> Ontology for Biomedical Investigations parsing failed.
>>> 
>>> The BioPortal team is investigating the issue.
>>> 
>>> Please contact support at bioontology.org if you have questions.
>>> 
>>> Thank you,
>>> The BioPortal Team 
>> 
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> 
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Trish Whetzel, PhD
Outreach Coordinator
The National Center for Biomedical Ontology
Ph: 650-721-2378
http://www.bioontology.org

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