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[bioontology-support] [BioPortal] Ontology for Biomedical Investigations Parsing Failed
jiezheng at pcbi.upenn.edu
Tue Apr 10 07:12:30 PDT 2012
Any progress on loading OBI? It still shows 'parsing error' on the
Bioportal website and we have uploaded the ontology 10 days ago.
On 4/5/2012 4:39 PM, Trish Whetzel wrote:
> Hi Jie,
> Yes, the issue is being reviewed. A ClassCastException error was
> found. I don't yet have more details on what needs to be done to
> resolve the issue.
> On Apr 5, 2012, at 1:08 PM, Jie Zheng wrote:
>> Is anyone in charge of the parsing error issue of OBI? Any issue we
>> need to fix in the submitted ontology?
>> On 4/2/2012 10:39 AM, Jie Zheng wrote:
>>> The new version of OBI uploaded on March 30 is the version that
>>> imports BFO 2.0 (prerelease)
>>> (http://purl.obolibrary.org/obo/bfo.owl) which has problem to be
>>> opened by Protege 3.4. The one uploaded on April 1 merged BFO to
>>> OBI. It is no problem to be opened using Protege v3.4 and Protege
>>> v4.1. Reasoning using Hermit on Protege 4.1 works fine as well.
>>> Please let me know if you find any issue.
>>> On 4/2/2012 2:34 AM, support at bioontology.org
>>> <mailto:support at bioontology.org> wrote:
>>>> Ontology for Biomedical Investigations parsing failed.
>>>> The BioPortal team is investigating the issue.
>>>> Please contact support at bioontology.org
>>>> <mailto:support at bioontology.org> if you have questions.
>>>> Thank you,
>>>> The BioPortal Team
>>> bioontology-support mailing list
>>> bioontology-support at lists.stanford.edu
>>> <mailto:bioontology-support at lists.stanford.edu>
>> bioontology-support mailing list
>> bioontology-support at lists.stanford.edu
>> <mailto:bioontology-support at lists.stanford.edu>
> Trish Whetzel, PhD
> Outreach Coordinator
> The National Center for Biomedical Ontology
> Ph: 650-721-2378
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