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[bioontology-support] (no subject)

Mobed, Ketty Ketty.Mobed at ucsf.edu
Thu Apr 12 17:35:52 PDT 2012


Hi Paul,

since this is supposed to work bidirectional, I also searched for the term 'Female' from the other ontology (HOM-OSHPD_USECASE), but got the same results (could not find term 'Female' to be mapped to '2'). Why is that?

Thanks,
Ketty



________________________________________
From: Paul R Alexander [palexander at stanford.edu]
Sent: Thursday, April 12, 2012 3:37 PM
To: Mobed, Ketty
Cc: Rekapalli, Hari; Trish Whetzel; support at bioontology.org
Subject: Re: [bioontology-support] (no subject)

Ketty,

So when you type '2' into the search input nothing happens? If that's
the case, then there is an explanation. The search will not trigger
unless you type in at least three characters. Searching on the id,
OSHPD_0000000sex_2, works fine for me.

Paul R Alexander
Web / UI Developer
NCBO BioPortal
Stanford Center for Biomedical Informatics Research


On 4/12/12 3:31 PM, Mobed, Ketty wrote:
> What I am trying to do is to map female ('2') from Ontology 1652 (HOM-OSHPD_USECASE) to Ontology 1648 (HOM-DATASOURCE_OSHPD) '2' using the Term Mappings tab (I have done this before). But when I do the term search in Term Mapper the term 'isn't found' in the upper right hand corner of the term search window where i would usually see it. I hope this explanation helps.
>
> Ketty
>
>
>
> ________________________________________
> From: Paul R Alexander [palexander at stanford.edu]
> Sent: Thursday, April 12, 2012 3:09 PM
> To: Mobed, Ketty
> Cc: Rekapalli, Hari; Trish Whetzel; support at bioontology.org
> Subject: Re: [bioontology-support] (no subject)
>
> Ketty,
>
> Can you give me a few more details about what isn't working for you? I
> can load both pages fine. Please be detailed about what you expect to
> see or do and what is actually happening. If you can take a screenshot
> that shows what you are seeing that is broken it would also be very helpful.
>
> Thanks,
> Paul R Alexander
> Web / UI Developer
> NCBO BioPortal
> Stanford Center for Biomedical Informatics Research
>
>
> On 4/12/12 2:51 PM, Mobed, Ketty wrote:
>> Hi Paul,
>>
>> yes, for 1652 here is one of the term mappings URL
>> http://bioportal.bioontology.org/ontologies/46061/?p=terms&conceptid=MM_CLASS_217#mappings
>> that I was trying to map to ont ID 1648
>> http://bioportal.bioontology.org/ontologies/46190/?p=terms&conceptid=OSHPD_0000000sex_2#mappings.
>> It used to work but not today. I was going to demo this.
>>
>> Thanks,
>> Ketty
>>
>>
>> ________________________________________
>> From: Rekapalli, Hari
>> Sent: Thursday, April 12, 2012 1:13 PM
>> To: Paul R Alexander; Mobed, Ketty
>> Cc: Trish Whetzel; support at bioontology.org
>> Subject: RE: [bioontology-support] (no subject)
>>
>> I can't access this page:
>> http://purl.bioontology.org/ontology/HOM-OSHPD_UseCas
>> the ontology id is 1652. I've been getting the following message the whole day:
>> "We're sorry but something has gone wrong. We have been notified of this error."
>>
>> Thanks,
>> Hari
>> ________________________________________
>> From: Paul R Alexander [palexander at stanford.edu]
>> Sent: Thursday, April 12, 2012 12:36 PM
>> To: Mobed, Ketty
>> Cc: Trish Whetzel; support at bioontology.org; Rekapalli, Hari
>> Subject: Re: [bioontology-support] (no subject)
>>
>> Ketty,
>>
>> Do you mean the page at this address?
>> http://bioportal.bioontology.org/mappings
>>
>> If not, can you send me the url where you are having problems?
>>
>> Thanks,
>> Paul R Alexander
>> Web / UI Developer
>> NCBO BioPortal
>> Stanford Center for Biomedical Informatics Research
>>
>>
>> On 4/12/12 12:03 PM, Mobed, Ketty wrote:
>>> Help! The Term Mappings tab in BP is not functioning. Is something going on?
>>>
>>> Thanks,
>>> Ketty
>>>
>>> 'It's the little things that matter'
>>>
>>> Ketty Mobed, PhD
>>> UCSF-IHPS-Informatics Lab
>>> ketty.mobed at ucsf.edu
>>> 415-352-8815
>>>
>>> _______________________________________________
>>> bioontology-support mailing list
>>> bioontology-support at lists.stanford.edu
>>> https://mailman.stanford.edu/mailman/listinfo/bioontology-support
>>
>
>





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