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[bioontology-support] (no subject)

Mobed, Ketty Ketty.Mobed at ucsf.edu
Thu Apr 12 17:52:56 PDT 2012


Paul, I just tried again on my end, but wasn't successful ('no results found' statement)

Also the other concerning thing is that I actually mapped all of these nodes last August and none actually appear. Why?

I'd be happy to do a screenshare session.

Thanks,
Ketty


________________________________________
From: Paul R Alexander [palexander at stanford.edu]
Sent: Thursday, April 12, 2012 5:45 PM
To: Mobed, Ketty
Cc: Rekapalli, Hari; Trish Whetzel; support at bioontology.org
Subject: Re: [bioontology-support] (no subject)

I went to this url:
http://bioportal.bioontology.org/ontologies/46190/?p=terms&conceptid=OSHPD_0000000sex_2#mappings

Then when I created a mapping, I selected the HOM-OSHPD_UseCase ontology
from the list and searched for 'female', which worked fine.

Paul R Alexander
Web / UI Developer
NCBO BioPortal
Stanford Center for Biomedical Informatics Research


On 4/12/12 5:35 PM, Mobed, Ketty wrote:
> Hi Paul,
>
> since this is supposed to work bidirectional, I also searched for the term 'Female' from the other ontology (HOM-OSHPD_USECASE), but got the same results (could not find term 'Female' to be mapped to '2'). Why is that?
>
> Thanks,
> Ketty
>
>
>
> ________________________________________
> From: Paul R Alexander [palexander at stanford.edu]
> Sent: Thursday, April 12, 2012 3:37 PM
> To: Mobed, Ketty
> Cc: Rekapalli, Hari; Trish Whetzel; support at bioontology.org
> Subject: Re: [bioontology-support] (no subject)
>
> Ketty,
>
> So when you type '2' into the search input nothing happens? If that's
> the case, then there is an explanation. The search will not trigger
> unless you type in at least three characters. Searching on the id,
> OSHPD_0000000sex_2, works fine for me.
>
> Paul R Alexander
> Web / UI Developer
> NCBO BioPortal
> Stanford Center for Biomedical Informatics Research
>
>
> On 4/12/12 3:31 PM, Mobed, Ketty wrote:
>> What I am trying to do is to map female ('2') from Ontology 1652 (HOM-OSHPD_USECASE) to Ontology 1648 (HOM-DATASOURCE_OSHPD) '2' using the Term Mappings tab (I have done this before). But when I do the term search in Term Mapper the term 'isn't found' in the upper right hand corner of the term search window where i would usually see it. I hope this explanation helps.
>>
>> Ketty
>>
>>
>>
>> ________________________________________
>> From: Paul R Alexander [palexander at stanford.edu]
>> Sent: Thursday, April 12, 2012 3:09 PM
>> To: Mobed, Ketty
>> Cc: Rekapalli, Hari; Trish Whetzel; support at bioontology.org
>> Subject: Re: [bioontology-support] (no subject)
>>
>> Ketty,
>>
>> Can you give me a few more details about what isn't working for you? I
>> can load both pages fine. Please be detailed about what you expect to
>> see or do and what is actually happening. If you can take a screenshot
>> that shows what you are seeing that is broken it would also be very helpful.
>>
>> Thanks,
>> Paul R Alexander
>> Web / UI Developer
>> NCBO BioPortal
>> Stanford Center for Biomedical Informatics Research
>>
>>
>> On 4/12/12 2:51 PM, Mobed, Ketty wrote:
>>> Hi Paul,
>>>
>>> yes, for 1652 here is one of the term mappings URL
>>> http://bioportal.bioontology.org/ontologies/46061/?p=terms&conceptid=MM_CLASS_217#mappings
>>> that I was trying to map to ont ID 1648
>>> http://bioportal.bioontology.org/ontologies/46190/?p=terms&conceptid=OSHPD_0000000sex_2#mappings.
>>> It used to work but not today. I was going to demo this.
>>>
>>> Thanks,
>>> Ketty
>>>
>>>
>>> ________________________________________
>>> From: Rekapalli, Hari
>>> Sent: Thursday, April 12, 2012 1:13 PM
>>> To: Paul R Alexander; Mobed, Ketty
>>> Cc: Trish Whetzel; support at bioontology.org
>>> Subject: RE: [bioontology-support] (no subject)
>>>
>>> I can't access this page:
>>> http://purl.bioontology.org/ontology/HOM-OSHPD_UseCas
>>> the ontology id is 1652. I've been getting the following message the whole day:
>>> "We're sorry but something has gone wrong. We have been notified of this error."
>>>
>>> Thanks,
>>> Hari
>>> ________________________________________
>>> From: Paul R Alexander [palexander at stanford.edu]
>>> Sent: Thursday, April 12, 2012 12:36 PM
>>> To: Mobed, Ketty
>>> Cc: Trish Whetzel; support at bioontology.org; Rekapalli, Hari
>>> Subject: Re: [bioontology-support] (no subject)
>>>
>>> Ketty,
>>>
>>> Do you mean the page at this address?
>>> http://bioportal.bioontology.org/mappings
>>>
>>> If not, can you send me the url where you are having problems?
>>>
>>> Thanks,
>>> Paul R Alexander
>>> Web / UI Developer
>>> NCBO BioPortal
>>> Stanford Center for Biomedical Informatics Research
>>>
>>>
>>> On 4/12/12 12:03 PM, Mobed, Ketty wrote:
>>>> Help! The Term Mappings tab in BP is not functioning. Is something going on?
>>>>
>>>> Thanks,
>>>> Ketty
>>>>
>>>> 'It's the little things that matter'
>>>>
>>>> Ketty Mobed, PhD
>>>> UCSF-IHPS-Informatics Lab
>>>> ketty.mobed at ucsf.edu
>>>> 415-352-8815
>>>>
>>>> _______________________________________________
>>>> bioontology-support mailing list
>>>> bioontology-support at lists.stanford.edu
>>>> https://mailman.stanford.edu/mailman/listinfo/bioontology-support
>>
>
>





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