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[bioontology-support] BAO 1.6

Stephan Schurer PhD stephan.schurer at gmail.com
Mon Apr 16 06:27:16 PDT 2012


Thanks. Please let us know. I hate to create more work for you to remove or
change anything. Thanks so much for you help with correcting the recent
version.
Stephan

On Mon, Apr 16, 2012 at 5:48 AM, Trish Whetzel <whetzel at stanford.edu> wrote:

> Hi Stephan,
>
> As far as pre-viewing the ontology, in some cases we have loaded the
> ontology to the staging server. However, this is not the best solution
> overall.  Ray, do you have suggestions on more robust mechanisms to handle
> pre-viewing new ontology versions before the new version is made public or
> would you expect that as we move to the triple-store backend that this will
> become a non-issue?
>
> Trish
>
>
> On Apr 16, 2012, at 2:14 AM, Stephan Schurer PhD wrote:
>
> Thank you! I need to find a better way to preview how the ontology gets
> displayed in the bioportal.
> Stephan
>
> On Sun, Apr 15, 2012 at 9:20 AM, Trish Whetzel <whetzel at stanford.edu>wrote:
>
>> Hi Stephan,
>>
>> Version 47196 is now removed.
>>
>> Trish
>>
>>
>> On Apr 12, 2012, at 8:55 PM, Stephan Schurer PhD wrote:
>>
>> Hallo, I uploaded a new version 1.6. Can you please delete the Bioportal
>> entry BAO 1.6 uploaded 04/09/2012:
>> http://bioportal.bioontology.org/ontologies/1533
>> http://bioportal.bioontology.org/ontologies/47196?p=terms
>>
>> Thank you and sorry for the trouble.
>>
>> Stephan
>>
>>
>> On Wed, Apr 11, 2012 at 3:50 PM, Stephan Schurer PhD <
>> stephan.schurer at gmail.com> wrote:
>>
>>> Dear BioPortal support,
>>>
>>> I need to replace the BAO 1.6 version. We had two labels, but it looks
>>> bad when parsed in bioportal. Please see email below.
>>> If you can delete version 1.6, I will upload again.
>>>
>>> Thanks,
>>>
>>> Stephan
>>>
>>> P.S. Is there a good way to check prior to upload to the portal how the
>>> parsed ontology will show. There are always some subtle differences to
>>> Protege.
>>>
>>>
>>> ---------- Forwarded message ----------
>>> From: Stephan Schurer PhD <stephan.schurer at gmail.com>
>>> Date: Wed, Apr 11, 2012 at 3:25 PM
>>> Subject: BAO 1.6
>>> To: Trish Whetzel <whetzel at stanford.edu>
>>> Cc: Uma Vempati <UVempati at med.miami.edu>, Saminda Abeyruwan <
>>> samindaa at gmail.com>
>>>
>>>
>>> Hallo Trish,
>>>
>>> We just uploaded BAO 1.6 It processed fine, but I see one class that
>>> looks funny: 'bioassay component' / 'assay format' / {'cell based format',
>>> 'cell-based format'}
>>> It appears that this is because there are two labels. Not sure how this
>>> happened, but we need to correct it.
>>> Is there a way I can replace this version, or can you?
>>>
>>> Thanks,
>>>
>>> Stephan
>>>
>>>
>>
>>
>>
>
>   Trish Whetzel, PhD
> Outreach Coordinator
> The National Center for Biomedical Ontology
> Ph: 650-721-2378
> http://www.bioontology.org
>
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>
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