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[bioontology-support] (no subject)

Paul R Alexander palexander at stanford.edu
Fri Apr 20 10:24:49 PDT 2012


Ketty,

We've fixed some bugs that were preventing your older mappings from 
showing. I think creating mappings should work properly now as well. Can 
you give it another try and let me know how it goes?

Thanks,
Paul R Alexander
Web / UI Developer
NCBO BioPortal
Stanford Center for Biomedical Informatics Research


On 4/19/12 12:55 AM, Mobed, Ketty wrote:
> Hi Paul,
>
> the issue of term mapping still remains for us. Do you have any suggestions? This is a critical issue for us. Right now HOM-EPIC and HOM-DATASRCE_EPIC which used to have maps between gender, race, marital status, don't show any term mappings at all any more, why?
>
> Thanks,
> Ketty
>
> ________________________________________
> From: Mobed, Ketty
> Sent: Thursday, April 12, 2012 5:52 PM
> To: Paul R Alexander
> Cc: Rekapalli, Hari; Trish Whetzel; support at bioontology.org
> Subject: RE: [bioontology-support] (no subject)
>
> Paul, I just tried again on my end, but wasn't successful ('no results found' statement)
>
> Also the other concerning thing is that I actually mapped all of these nodes last August and none actually appear. Why?
>
> I'd be happy to do a screenshare session.
>
> Thanks,
> Ketty
>
>
> ________________________________________
> From: Paul R Alexander [palexander at stanford.edu]
> Sent: Thursday, April 12, 2012 5:45 PM
> To: Mobed, Ketty
> Cc: Rekapalli, Hari; Trish Whetzel; support at bioontology.org
> Subject: Re: [bioontology-support] (no subject)
>
> I went to this url:
> http://bioportal.bioontology.org/ontologies/46190/?p=terms&conceptid=OSHPD_0000000sex_2#mappings
>
> Then when I created a mapping, I selected the HOM-OSHPD_UseCase ontology
> from the list and searched for 'female', which worked fine.
>
> Paul R Alexander
> Web / UI Developer
> NCBO BioPortal
> Stanford Center for Biomedical Informatics Research
>
>
> On 4/12/12 5:35 PM, Mobed, Ketty wrote:
>> Hi Paul,
>>
>> since this is supposed to work bidirectional, I also searched for the term 'Female' from the other ontology (HOM-OSHPD_USECASE), but got the same results (could not find term 'Female' to be mapped to '2'). Why is that?
>>
>> Thanks,
>> Ketty
>>
>>
>>
>> ________________________________________
>> From: Paul R Alexander [palexander at stanford.edu]
>> Sent: Thursday, April 12, 2012 3:37 PM
>> To: Mobed, Ketty
>> Cc: Rekapalli, Hari; Trish Whetzel; support at bioontology.org
>> Subject: Re: [bioontology-support] (no subject)
>>
>> Ketty,
>>
>> So when you type '2' into the search input nothing happens? If that's
>> the case, then there is an explanation. The search will not trigger
>> unless you type in at least three characters. Searching on the id,
>> OSHPD_0000000sex_2, works fine for me.
>>
>> Paul R Alexander
>> Web / UI Developer
>> NCBO BioPortal
>> Stanford Center for Biomedical Informatics Research
>>
>>
>> On 4/12/12 3:31 PM, Mobed, Ketty wrote:
>>> What I am trying to do is to map female ('2') from Ontology 1652 (HOM-OSHPD_USECASE) to Ontology 1648 (HOM-DATASOURCE_OSHPD) '2' using the Term Mappings tab (I have done this before). But when I do the term search in Term Mapper the term 'isn't found' in the upper right hand corner of the term search window where i would usually see it. I hope this explanation helps.
>>>
>>> Ketty
>>>
>>>
>>>
>>> ________________________________________
>>> From: Paul R Alexander [palexander at stanford.edu]
>>> Sent: Thursday, April 12, 2012 3:09 PM
>>> To: Mobed, Ketty
>>> Cc: Rekapalli, Hari; Trish Whetzel; support at bioontology.org
>>> Subject: Re: [bioontology-support] (no subject)
>>>
>>> Ketty,
>>>
>>> Can you give me a few more details about what isn't working for you? I
>>> can load both pages fine. Please be detailed about what you expect to
>>> see or do and what is actually happening. If you can take a screenshot
>>> that shows what you are seeing that is broken it would also be very helpful.
>>>
>>> Thanks,
>>> Paul R Alexander
>>> Web / UI Developer
>>> NCBO BioPortal
>>> Stanford Center for Biomedical Informatics Research
>>>
>>>
>>> On 4/12/12 2:51 PM, Mobed, Ketty wrote:
>>>> Hi Paul,
>>>>
>>>> yes, for 1652 here is one of the term mappings URL
>>>> http://bioportal.bioontology.org/ontologies/46061/?p=terms&conceptid=MM_CLASS_217#mappings
>>>> that I was trying to map to ont ID 1648
>>>> http://bioportal.bioontology.org/ontologies/46190/?p=terms&conceptid=OSHPD_0000000sex_2#mappings.
>>>> It used to work but not today. I was going to demo this.
>>>>
>>>> Thanks,
>>>> Ketty
>>>>
>>>>
>>>> ________________________________________
>>>> From: Rekapalli, Hari
>>>> Sent: Thursday, April 12, 2012 1:13 PM
>>>> To: Paul R Alexander; Mobed, Ketty
>>>> Cc: Trish Whetzel; support at bioontology.org
>>>> Subject: RE: [bioontology-support] (no subject)
>>>>
>>>> I can't access this page:
>>>> http://purl.bioontology.org/ontology/HOM-OSHPD_UseCas
>>>> the ontology id is 1652. I've been getting the following message the whole day:
>>>> "We're sorry but something has gone wrong. We have been notified of this error."
>>>>
>>>> Thanks,
>>>> Hari
>>>> ________________________________________
>>>> From: Paul R Alexander [palexander at stanford.edu]
>>>> Sent: Thursday, April 12, 2012 12:36 PM
>>>> To: Mobed, Ketty
>>>> Cc: Trish Whetzel; support at bioontology.org; Rekapalli, Hari
>>>> Subject: Re: [bioontology-support] (no subject)
>>>>
>>>> Ketty,
>>>>
>>>> Do you mean the page at this address?
>>>> http://bioportal.bioontology.org/mappings
>>>>
>>>> If not, can you send me the url where you are having problems?
>>>>
>>>> Thanks,
>>>> Paul R Alexander
>>>> Web / UI Developer
>>>> NCBO BioPortal
>>>> Stanford Center for Biomedical Informatics Research
>>>>
>>>>
>>>> On 4/12/12 12:03 PM, Mobed, Ketty wrote:
>>>>> Help! The Term Mappings tab in BP is not functioning. Is something going on?
>>>>>
>>>>> Thanks,
>>>>> Ketty
>>>>>
>>>>> 'It's the little things that matter'
>>>>>
>>>>> Ketty Mobed, PhD
>>>>> UCSF-IHPS-Informatics Lab
>>>>> ketty.mobed at ucsf.edu
>>>>> 415-352-8815
>>>>>
>>>>> _______________________________________________
>>>>> bioontology-support mailing list
>>>>> bioontology-support at lists.stanford.edu
>>>>> https://mailman.stanford.edu/mailman/listinfo/bioontology-support
>>
>
>




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