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[bioontology-support] category list on BioPortal VM

Line Pouchard linepouchard at gmail.com
Thu Apr 26 11:55:38 PDT 2012


Hi Paul:

Is there any other way than using a local Protege client?  This is not
really an option for our install where I only use cli.

Line

On Thu, Apr 26, 2012 at 2:41 PM, Paul R Alexander
<palexander at stanford.edu> wrote:
> On 4/26/12 11:36 AM, Line Pouchard wrote:
>>>
>>> Instructions say: modify the Bioportal_protege project file.
>>
>> 1) if I download from the support page and modify using my own protege
>> copy, which resides on a different machine than the VM, where do I
>> place the modified copy in the VM tree?
>
> You need to use a local Protege client to connect to the Virtual Appliance.
> You won't need to store the project file on the server at all, it is only
> for local use in connecting to the Appliance.
>>
>> and 2)
>> Where in the tree do I find my VM original?
>> just want to cut and paste the correct ip and domain
>
> There is no original file on the Appliance, this is a totally separate
> process.
>
> Modifying the Protege project file will not change the categories, follow
> steps 3-8 after modifying the file and opening it in your local copy of
> Protege in order to actually make changes.
>
>  I don't know what the IP or domain for your Appliance is, but it should be
> the same as whatever you use to access the UI or REST services.
>
> Steps 3-8 on the instructions require you to be running Protege locally on
> your machine in order to connect to the Appliance, where you can then use
> Protege to modify the available categories. Changes will be made instantly
> (though may take a while to show up on the UI due to caching) and you won't
> need to upload anything to the Appliance in order to make the change.
>
> Paul R Alexander
> Web / UI Developer
> NCBO BioPortal
> Stanford Center for Biomedical Informatics Research


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