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[bioontology-support] [BioPortal] Feedback from Daniel Lyman

Trish Whetzel whetzel at stanford.edu
Fri Aug 31 08:30:36 PDT 2012


Can you send a few of the terms you are testing? Did your colleague also try the Annotator with Internet Explorer and if so which version?

Trish 


On Aug 31, 2012, at 8:10 AM, support at bioontology.org wrote:

> 
> Name: Daniel Lyman
> 
> Email: lyman_daniel at bah.com
> 
> Location: http://bioportal.bioontology.org/annotator
> 
> Comment:
> Problem: I am having difficulty getting the BioPortal Annotator at http://bioportal.bioontology.org/annotator to work on my computer (Internet Explore).
> 
> Details: When I add a list of terms to the input field, select SNOMED CT (as the target terminology) and click Annotate, I get a “No annotations found” message in the results table, even though the input terms are known matches (by independent methods, including the BioPortal Loom engine) to SNOMED CT terms. In addition, another message in the result table says “total results [some number, n]”. This same result occurs using SNOMED CT terms as input against the SNOMED CT terminology and a similar result occurs using input terms that are known matches (by independent methods) to other ontologies, such as NCIt (i.e., NCIt terms x NCIt). More oddly still, when a colleague runs the same tests on another computer, the Annotator works: SNOMED CT terms match the SNOMED CT terminology, NCIt terms match the NCIt.
> 
> Please advise.
> Thanks in advance for your help.
> 
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Trish Whetzel, PhD
Outreach Coordinator
The National Center for Biomedical Ontology
Ph: 650-721-2378
http://www.bioontology.org

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