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[bioontology-support] problems editing metadata about our ontology submission on BioPortal website

Paul R Alexander palexander at stanford.edu
Fri Aug 31 15:19:49 PDT 2012


Stella,

I found a bug that is likely preventing you from being able to see the 
link. I'll look into it and let you know when I'm able to fix it.

Paul


On 8/31/12 1:50 PM, Stella Mitchell wrote:
>
> Paul,
>
> Thank you very much for making those changes.
>
> No, when I am logged in I do not get the 'Edit Metadata' option or the 
> submit a new version link for a view that I have submitted.  Instead 
> of seeing options as in the screenshot you sent, I see this when I am 
> logged in as stellamit:
>
>
> Do you know what that could be due to?  Is it possibly a permissions 
> issue (for stellamit), or a browser issue (I've tried from Safari 
> 5.1.7 and Firefox 15.0)?
>
> Thanks again,
> Stella
>
>
> On Aug 31, 2012, at 3:56 PM, Paul R Alexander wrote:
>
>> Stella,
>>
>> I've made the requested changes. In the future, if you are logged in 
>> you should get the option to "Edit Metadata" for each view you have 
>> submitted. You can see this option (as well as the one to submit a 
>> new version of a view) in this screenshot:
>> http://cl.ly/J8ih
>>
>> You need to click on the name of the view in order to see the option 
>> to submit a new version. The "Edit Metadata" link should be there 
>> from the start.
>>
>> Please let me know if you have any questions.
>>
>> Paul
>>
>>
>> On Fri Aug 31 11:45:11 2012, Stella Mitchell wrote:
>>>
>>> Trish and Paul,
>>>
>>> Thank you.
>>>
>>> The updated license text is in the attached file.
>>>
>>>
>>> Here are the other changes:
>>>  - Please delete views with IDs 2090 and 2123
>>>  - Changes to view names:   (from --> to)
>>>
>>>       - Citation Counting and Context Characterization --> Citation
>>> Counting
>>>
>>>       - *D*ateTimeValuePre*cs*ion --> dateTimeValuePrecision individuals
>>>
>>>       - documentStatus --> documentStatus individuals
>>>
>>>       - FaBi*o* --> FaBiO (bibliographic)
>>>
>>>       - bibliographic --> Bibliographic
>>>
>>>       - event ontology --> Event
>>>
>>>       - foaf --> FOAF (people, organizations, groups)
>>>
>>>       - geopolitical ontlogy --> Geopolitical
>>>
>>>       - provenance --> Provenance
>>>
>>>       -  scientific research resources --> Scientific Research Resources
>>>
>>>       -  skos --> SKOS (concepts)
>>>
>>> We may make further changes to the view metadata after Jon reviews the
>>> style we want to use and information to convey there, but this gets us
>>> to a basic level of coherence at the top view.  Description fields
>>> will need to be refined, but I won't send those changes now.
>>>
>>> Thanks again!
>>> Stella
>>>
>>>
>>>
>>> On Aug 31, 2012, at 1:02 PM, Trish Whetzel wrote:
>>>
>>>> Ah, I didn't realize the license information was not accessible to
>>>> Edit. Can you send the new license information and other updates to
>>>> Paul to update in the meantime?
>>>>
>>>> Trish
>>>>
>>>> On Aug 31, 2012, at 9:43 AM, Stella Mitchell <sjm222 at cornell.edu
>>>> <mailto:sjm222 at cornell.edu>> wrote:
>>>>
>>>>> Hi Trish,
>>>>>
>>>>> That's not working for me. When I select the administer option as
>>>>> you describe, I can edit metadata for the main ontology entry
>>>>> (except not the license information) but not for the views. The
>>>>> views have names, short names, descriptions, etc, that we need to
>>>>> update.
>>>>>
>>>>> example:  I want to fix the typo in the name of this view, and
>>>>> possibly also change the description: (and similarly with some of
>>>>> the other 13 views)
>>>>>
>>>>> [cid:82FADF3D-F7D1-4090-88A8-0C1DD1048573]
>>>>>
>>>>>
>>>>>
>>>>>
>>>>> I also do not find an option for submitting new versions of of the
>>>>> content of an existing view -- but if we can delete the previous and
>>>>> duplicate ones by sending you the id, I will go that route!
>>>>>
>>>>> Also, we need to update the license text for the main ontology entry
>>>>> -- this has changed for version 1.5.
>>>>>
>>>>> Thanks!
>>>>>
>>>>> Stella
>>>>>
>>>>>
>>>>>
>>>>> On Aug 31, 2012, at 11:35 AM, Trish Whetzel wrote:
>>>>>
>>>>> Hi Stella,
>>>>>
>>>>> When logged in, to edit the metadata select the "Administer" option
>>>>> on the ontology summary page:
>>>>> http://bioportal.bioontology.org/ontologies/1699
>>>>>
>>>>> To remove views, can you send us the ontology version identifiers to
>>>>> be removed? Alternatively, you can also submit new versions of
>>>>> existing views to update the content.
>>>>>
>>>>> Trish
>>>>>
>>>>> <vivo-admin.tiff>
>>>>>
>>>>>
>>>>>
>>>>> On Aug 31, 2012, at 4:18 AM, Stella Mitchell wrote:
>>>>>
>>>>>
>>>>> Correction, the second to last sentence should be:   We are *not*
>>>>> encountering a specific error, rather we just cannot see how in the
>>>>> interface to edit these items.
>>>>>
>>>>> Stella
>>>>>
>>>>> On Aug 31, 2012, at 7:15 AM,  wrote:
>>>>>
>>>>>
>>>>> Hello,
>>>>>
>>>>> This message is about ontology submission
>>>>> http://bioportal.bioontology.org/ontologies/1699 (VIVO).
>>>>>
>>>>> There are three editing operations that we need to do, but are
>>>>> unable to:
>>>>> 1. edit the metadata about views defined for the ontology (i.e.
>>>>> description, name, short name...)
>>>>> 2. delete several views
>>>>> 3. update the license information for
>>>>> http://bioportal.bioontology.org/ontologies/1699
>>>>>
>>>>> We are encountering a specific error, rather we just cannot see how
>>>>> in the interface to edit these items.  We are working from from
>>>>> browsers  Safari 5.1.7 and Firefox 15.0.
>>>>>
>>>>> Thank you,
>>>>> Stella Mitchell
>>>>> Albert R. Mann Library
>>>>> Cornell University
>>>>>
>>>>>
>>>>>
>>>>> Stella Mitchell
>>>>> sjm222 at cornell.edu<mailto:sjm222 at cornell.edu>
>>>>>
>>>>>
>>>>>
>>>>> _______________________________________________
>>>>> bioontology-support mailing list
>>>>> bioontology-support at lists.stanford.edu<mailto:bioontology-support at lists.stanford.edu>
>>>>> https://mailman.stanford.edu/mailman/listinfo/bioontology-support
>>>>>
>>>>>
>>>>> Stella Mitchell
>>>>> sjm222 at cornell.edu<mailto:sjm222 at cornell.edu>
>>>>>
>>>>>
>>>>>
>>>>> <PastedGraphic-1.tiff>
>>>
>>> Stella Mitchell
>>> sjm222 at cornell.edu <mailto:sjm222 at cornell.edu>
>>>
>>>
>>>
>
> Stella Mitchell
> sjm222 at cornell.edu <mailto:sjm222 at cornell.edu>
>
>
>

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