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[bioontology-support] [BioPortal] Feedback from Maryann Martone

Trish Whetzel whetzel at stanford.edu
Mon Dec 10 13:11:43 PST 2012


A new version of the Human Disease ontology was uploaded and the issue is now resolved.

Best,
Trish 


On Dec 4, 2012, at 3:10 PM, Trish Whetzel wrote:

> Hi Maryann, 
> 
> Thanks for reporting this. It looks like there is an error in parsing the ontology file. I've had some success with parsing the file in OBO-Edit but the hierarchy appears to have some issues and I will need to contact the ontology owners for more details in order to resolve the parsing issue which is upstream of the search issue.
> 
> Trish 
> 
> 
> On Dec 4, 2012, at 7:27 PM, Maryann Martone wrote:
> 
>> Also, to add to that, I tried searching using the advance option and selected Human Disease Ontology and it returned no results.
>> 
>> On Dec 4, 2012, at 11:20 AM, support at bioontology.org wrote:
>> 
>>> 
>>> Name: Maryann Martone
>>> 
>>> Email: mmartone at ucsd.edu
>>> 
>>> Location: http://bioportal.bioontology.org/ontologies/49537?p=terms
>>> 
>>> Comment:
>>> Tried to search for "pancreatitis" in the Human Disease Ontology.  It didn't come up in the general search as one of the options.  Used the browse function to select disease ontology and tried the most recent version (Dec 3, 2012).  The top level term was "met" with no expandable options.  The search didn't work.  I tried the last version, from Nov, and it said that search only worked with the most recent version.
>>> 
>> 
>> Maryann Martone, Ph. D.
>> Professor-in-Residence
>> Department of Neuroscience
>> University of California, San Diego
>> San Diego, CA 92093-0446
>> 
>> 858-822-0745
>> 
>> 
>> 
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>> bioontology-support at lists.stanford.edu
>> https://mailman.stanford.edu/mailman/listinfo/bioontology-support
> 
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