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[bioontology-support] Opening/Converting RRF files

manuelso manuelso at stanford.edu
Wed Dec 12 10:05:42 PST 2012


Hi Simon,

The project that Trish mentions uses the UMLS Mysql backend. It does not transform the RRF files directly.

Manuel


On Dec 10, 2012, at 11:21 PM, Trish Whetzel <whetzel at stanford.edu> wrote:

> Hi Simon, 
> 
> I am not very familiar with the RRF format. However, as part of our work to develop the SPARQL endpoint for BioPortal, a umls2rdf [1] tool was created.
> 
> Trish 
> 
> [1] https://github.com/ncbo/umls2rdf
> 
> 
> On Dec 10, 2012, at 7:19 PM, Simon Kocbek wrote:
> 
>> Hi,
>>  
>> I would like to work with the ICD ontology (http://bioportal.bioontology.org/ontologies/1101) and I am not used to the RRF format. Is there a way to simply convert RRF files to OWL?
>>  
>> Is there a tool to manipulate RRF files? I am aware of LexEVS, however, I cannot find its loader for general RRF ontologies.
>>  
>> Thanks,
>> Simon
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>> bioontology-support at lists.stanford.edu
>> https://mailman.stanford.edu/mailman/listinfo/bioontology-support
> 
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