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[bioontology-support] Can I know that one term is the same as another term by some sort of color code?

anita bandrowski abandrowski at ucsd.edu
Mon Dec 17 13:03:36 PST 2012


Dear Bioportal-related folks.

Thanks to the xrefs and mappings (as well as Mireot-ing if that is a term)
we can now be sure that one term is the same as the same term in another
ontology, however knowing that there is a mapping or a term id that is the
same could be a little more clear on the search portal.

Here is an example of the first two results for Melanoma. Both of these
actually point to the same term (same id), but there is no color code or
anything else on the search site that tells me this without clicking into
each of the terms and looking at each term. Would it be possible to somehow
let users know that the terms that have the same ids are actually the same
terms?


Melanoma - MedDRA<http://bioportal.bioontology.org/ontologies/1422?p=terms&conceptid=http%3A%2F%2Fpurl.bioontology.org%2Fontology%2FMDR%2F10053571>
http://purl.bioontology.org/ontology/MDR/10053571
details<http://bioportal.bioontology.org/ajax/term_details/1422?styled=false&conceptid=http%3A%2F%2Fpurl.bioontology.org%2Fontology%2FMDR%2F10053571>
 - visualize - 15 more from this
ontology[hide]<http://bioportal.bioontology.org/search?query=melanoma&commit=Search#additional_results>
Benign melanoma<http://bioportal.bioontology.org/ontologies/1422?p=terms&conceptid=http%3A%2F%2Fpurl.bioontology.org%2Fontology%2FMDR%2F10068390>
http://purl.bioontology.org/ontology/MDR/10068390
details<http://bioportal.bioontology.org/ajax/term_details/1422?styled=false&conceptid=http%3A%2F%2Fpurl.bioontology.org%2Fontology%2FMDR%2F10068390>
 - visualize
Cervical melanoma<http://bioportal.bioontology.org/ontologies/1422?p=terms&conceptid=http%3A%2F%2Fpurl.bioontology.org%2Fontology%2FMDR%2F10049879>
http://purl.bioontology.org/ontology/MDR/10049879
details<http://bioportal.bioontology.org/ajax/term_details/1422?styled=false&conceptid=http%3A%2F%2Fpurl.bioontology.org%2Fontology%2FMDR%2F10049879>
 - visualize
Choroid melanoma<http://bioportal.bioontology.org/ontologies/1422?p=terms&conceptid=http%3A%2F%2Fpurl.bioontology.org%2Fontology%2FMDR%2F10008773>
http://purl.bioontology.org/ontology/MDR/10008773
details<http://bioportal.bioontology.org/ajax/term_details/1422?styled=false&conceptid=http%3A%2F%2Fpurl.bioontology.org%2Fontology%2FMDR%2F10008773>
 - visualize
Conjunctival melanoma<http://bioportal.bioontology.org/ontologies/1422?p=terms&conceptid=http%3A%2F%2Fpurl.bioontology.org%2Fontology%2FMDR%2F10066384>
http://purl.bioontology.org/ontology/MDR/10066384
details<http://bioportal.bioontology.org/ajax/term_details/1422?styled=false&conceptid=http%3A%2F%2Fpurl.bioontology.org%2Fontology%2FMDR%2F10066384>
 - visualize
Gastric melanoma<http://bioportal.bioontology.org/ontologies/1422?p=terms&conceptid=http%3A%2F%2Fpurl.bioontology.org%2Fontology%2FMDR%2F10062281>
http://purl.bioontology.org/ontology/MDR/10062281
details<http://bioportal.bioontology.org/ajax/term_details/1422?styled=false&conceptid=http%3A%2F%2Fpurl.bioontology.org%2Fontology%2FMDR%2F10062281>
 - visualize
Intraocular melanoma<http://bioportal.bioontology.org/ontologies/1422?p=terms&conceptid=http%3A%2F%2Fpurl.bioontology.org%2Fontology%2FMDR%2F10061252>
http://purl.bioontology.org/ontology/MDR/10061252
details<http://bioportal.bioontology.org/ajax/term_details/1422?styled=false&conceptid=http%3A%2F%2Fpurl.bioontology.org%2Fontology%2FMDR%2F10061252>
 - visualize
Iritic melanoma<http://bioportal.bioontology.org/ontologies/1422?p=terms&conceptid=http%3A%2F%2Fpurl.bioontology.org%2Fontology%2FMDR%2F10052351>
http://purl.bioontology.org/ontology/MDR/10052351
details<http://bioportal.bioontology.org/ajax/term_details/1422?styled=false&conceptid=http%3A%2F%2Fpurl.bioontology.org%2Fontology%2FMDR%2F10052351>
 - visualize
Juvenile melanoma<http://bioportal.bioontology.org/ontologies/1422?p=terms&conceptid=http%3A%2F%2Fpurl.bioontology.org%2Fontology%2FMDR%2F10023255>
http://purl.bioontology.org/ontology/MDR/10023255
details<http://bioportal.bioontology.org/ajax/term_details/1422?styled=false&conceptid=http%3A%2F%2Fpurl.bioontology.org%2Fontology%2FMDR%2F10023255>
 - visualize
Lentigo melanoma<http://bioportal.bioontology.org/ontologies/1422?p=terms&conceptid=http%3A%2F%2Fpurl.bioontology.org%2Fontology%2FMDR%2F10024226>
http://purl.bioontology.org/ontology/MDR/10024226
details<http://bioportal.bioontology.org/ajax/term_details/1422?styled=false&conceptid=http%3A%2F%2Fpurl.bioontology.org%2Fontology%2FMDR%2F10024226>
 - visualize
Malignant melanoma<http://bioportal.bioontology.org/ontologies/1422?p=terms&conceptid=http%3A%2F%2Fpurl.bioontology.org%2Fontology%2FMDR%2F10025650>
http://purl.bioontology.org/ontology/MDR/10025650
details<http://bioportal.bioontology.org/ajax/term_details/1422?styled=false&conceptid=http%3A%2F%2Fpurl.bioontology.org%2Fontology%2FMDR%2F10025650>
 - visualize
Melanoma malignant<http://bioportal.bioontology.org/ontologies/1422?p=terms&conceptid=http%3A%2F%2Fpurl.bioontology.org%2Fontology%2FMDR%2F10027150>
http://purl.bioontology.org/ontology/MDR/10027150
details<http://bioportal.bioontology.org/ajax/term_details/1422?styled=false&conceptid=http%3A%2F%2Fpurl.bioontology.org%2Fontology%2FMDR%2F10027150>
 - visualize
Melanoma recurrent<http://bioportal.bioontology.org/ontologies/1422?p=terms&conceptid=http%3A%2F%2Fpurl.bioontology.org%2Fontology%2FMDR%2F10066600>
http://purl.bioontology.org/ontology/MDR/10066600
details<http://bioportal.bioontology.org/ajax/term_details/1422?styled=false&conceptid=http%3A%2F%2Fpurl.bioontology.org%2Fontology%2FMDR%2F10066600>
 - visualize
Melanoma skin<http://bioportal.bioontology.org/ontologies/1422?p=terms&conceptid=http%3A%2F%2Fpurl.bioontology.org%2Fontology%2FMDR%2F10027155>
http://purl.bioontology.org/ontology/MDR/10027155
details<http://bioportal.bioontology.org/ajax/term_details/1422?styled=false&conceptid=http%3A%2F%2Fpurl.bioontology.org%2Fontology%2FMDR%2F10027155>
 - visualize
Metastatic melanoma<http://bioportal.bioontology.org/ontologies/1422?p=terms&conceptid=http%3A%2F%2Fpurl.bioontology.org%2Fontology%2FMDR%2F10027481>
http://purl.bioontology.org/ontology/MDR/10027481
details<http://bioportal.bioontology.org/ajax/term_details/1422?styled=false&conceptid=http%3A%2F%2Fpurl.bioontology.org%2Fontology%2FMDR%2F10027481>
 - visualize
Nodular melanoma<http://bioportal.bioontology.org/ontologies/1422?p=terms&conceptid=http%3A%2F%2Fpurl.bioontology.org%2Fontology%2FMDR%2F10029488>
http://purl.bioontology.org/ontology/MDR/10029488
details<http://bioportal.bioontology.org/ajax/term_details/1422?styled=false&conceptid=http%3A%2F%2Fpurl.bioontology.org%2Fontology%2FMDR%2F10029488>
 - visualize
Melanoma - NCI Thesaurus<http://bioportal.bioontology.org/ontologies/1032?p=terms&conceptid=http%3A%2F%2Fncicb.nci.nih.gov%2Fxml%2Fowl%2FEVS%2FThesaurus.owl%23Melanoma>
http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#Melanoma
A malignant, usually aggressive tumor composed of atypical, neoplastic
melanocytes. Most often, melanomas arise in the skin (cutaneous melanomas)
and include the following histologic subtypes: superficial ...
details<http://bioportal.bioontology.org/ajax/term_details/1032?styled=false&conceptid=http%3A%2F%2Fncicb.nci.nih.gov%2Fxml%2Fowl%2FEVS%2FThesaurus.owl%23Melanoma>
 - visualize - 30 more from this
ontology<http://bioportal.bioontology.org/search?query=melanoma&commit=Search#additional_results>

Ok that is my rant for now, please let me know if I am not seeing something
or if this is something that can be implemented.
Best,
anita


-- 
Anita Bandrowski, Ph.D.
NIF Project Lead
UCSD 858-822-3629
http://neuinfo.org
9500 Gillman Dr.#0446
la Jolla, CA 92093-0446
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