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[bioontology-support] Can I know that one term is the same as another term by some sort of color code?

anita bandrowski abandrowski at ucsd.edu
Mon Dec 17 16:35:38 PST 2012


Hi Trish,
The uri does not have any indication that it is the same term, does it?
The one below has
MDR/10053571<http://purl.bioontology.org/ontology/MDR/10053571>
How do I know that this is the same as
OTHER_ONTOLOGY/10053571<http://purl.bioontology.org/ontology/MDR/10053571>
?
Can this be turned green, while other non-matching ones are a different
color? Maybe clumping these in the results?


On Mon, Dec 17, 2012 at 3:12 PM, Trish Whetzel <whetzel at stanford.edu> wrote:

> Hi Anita,
>
> Which of the 'melanoma' terms below have the same URI? In general, there
> have been a few requests to group the search results by URI as another
> option of ordering the search results in addition to the current search
> result order. As a step in this direction, the term URIs are now displayed
> in the search results.
>
> Trish
>
>
> On Dec 17, 2012, at 1:03 PM, anita bandrowski wrote:
>
> Dear Bioportal-related folks.
>
> Thanks to the xrefs and mappings (as well as Mireot-ing if that is a term)
> we can now be sure that one term is the same as the same term in another
> ontology, however knowing that there is a mapping or a term id that is the
> same could be a little more clear on the search portal.
>
> Here is an example of the first two results for Melanoma. Both of these
> actually point to the same term (same id), but there is no color code or
> anything else on the search site that tells me this without clicking into
> each of the terms and looking at each term. Would it be possible to somehow
> let users know that the terms that have the same ids are actually the same
> terms?
>
>
> Melanoma - MedDRA<http://bioportal.bioontology.org/ontologies/1422?p=terms&conceptid=http%3A%2F%2Fpurl.bioontology.org%2Fontology%2FMDR%2F10053571>
> http://purl.bioontology.org/ontology/MDR/10053571
> details<http://bioportal.bioontology.org/ajax/term_details/1422?styled=false&conceptid=http%3A%2F%2Fpurl.bioontology.org%2Fontology%2FMDR%2F10053571>
>  - visualize - 15 more from this ontology[hide]<http://bioportal.bioontology.org/search?query=melanoma&commit=Search#additional_results>
>  Benign melanoma<http://bioportal.bioontology.org/ontologies/1422?p=terms&conceptid=http%3A%2F%2Fpurl.bioontology.org%2Fontology%2FMDR%2F10068390>
> http://purl.bioontology.org/ontology/MDR/10068390
> details<http://bioportal.bioontology.org/ajax/term_details/1422?styled=false&conceptid=http%3A%2F%2Fpurl.bioontology.org%2Fontology%2FMDR%2F10068390>
>  - visualize
> Cervical melanoma<http://bioportal.bioontology.org/ontologies/1422?p=terms&conceptid=http%3A%2F%2Fpurl.bioontology.org%2Fontology%2FMDR%2F10049879>
> http://purl.bioontology.org/ontology/MDR/10049879
> details<http://bioportal.bioontology.org/ajax/term_details/1422?styled=false&conceptid=http%3A%2F%2Fpurl.bioontology.org%2Fontology%2FMDR%2F10049879>
>  - visualize
> Choroid melanoma<http://bioportal.bioontology.org/ontologies/1422?p=terms&conceptid=http%3A%2F%2Fpurl.bioontology.org%2Fontology%2FMDR%2F10008773>
> http://purl.bioontology.org/ontology/MDR/10008773
> details<http://bioportal.bioontology.org/ajax/term_details/1422?styled=false&conceptid=http%3A%2F%2Fpurl.bioontology.org%2Fontology%2FMDR%2F10008773>
>  - visualize
> Conjunctival melanoma<http://bioportal.bioontology.org/ontologies/1422?p=terms&conceptid=http%3A%2F%2Fpurl.bioontology.org%2Fontology%2FMDR%2F10066384>
> http://purl.bioontology.org/ontology/MDR/10066384
> details<http://bioportal.bioontology.org/ajax/term_details/1422?styled=false&conceptid=http%3A%2F%2Fpurl.bioontology.org%2Fontology%2FMDR%2F10066384>
>  - visualize
> Gastric melanoma<http://bioportal.bioontology.org/ontologies/1422?p=terms&conceptid=http%3A%2F%2Fpurl.bioontology.org%2Fontology%2FMDR%2F10062281>
> http://purl.bioontology.org/ontology/MDR/10062281
> details<http://bioportal.bioontology.org/ajax/term_details/1422?styled=false&conceptid=http%3A%2F%2Fpurl.bioontology.org%2Fontology%2FMDR%2F10062281>
>  - visualize
> Intraocular melanoma<http://bioportal.bioontology.org/ontologies/1422?p=terms&conceptid=http%3A%2F%2Fpurl.bioontology.org%2Fontology%2FMDR%2F10061252>
> http://purl.bioontology.org/ontology/MDR/10061252
> details<http://bioportal.bioontology.org/ajax/term_details/1422?styled=false&conceptid=http%3A%2F%2Fpurl.bioontology.org%2Fontology%2FMDR%2F10061252>
>  - visualize
> Iritic melanoma<http://bioportal.bioontology.org/ontologies/1422?p=terms&conceptid=http%3A%2F%2Fpurl.bioontology.org%2Fontology%2FMDR%2F10052351>
> http://purl.bioontology.org/ontology/MDR/10052351
> details<http://bioportal.bioontology.org/ajax/term_details/1422?styled=false&conceptid=http%3A%2F%2Fpurl.bioontology.org%2Fontology%2FMDR%2F10052351>
>  - visualize
> Juvenile melanoma<http://bioportal.bioontology.org/ontologies/1422?p=terms&conceptid=http%3A%2F%2Fpurl.bioontology.org%2Fontology%2FMDR%2F10023255>
> http://purl.bioontology.org/ontology/MDR/10023255
> details<http://bioportal.bioontology.org/ajax/term_details/1422?styled=false&conceptid=http%3A%2F%2Fpurl.bioontology.org%2Fontology%2FMDR%2F10023255>
>  - visualize
> Lentigo melanoma<http://bioportal.bioontology.org/ontologies/1422?p=terms&conceptid=http%3A%2F%2Fpurl.bioontology.org%2Fontology%2FMDR%2F10024226>
> http://purl.bioontology.org/ontology/MDR/10024226
> details<http://bioportal.bioontology.org/ajax/term_details/1422?styled=false&conceptid=http%3A%2F%2Fpurl.bioontology.org%2Fontology%2FMDR%2F10024226>
>  - visualize
> Malignant melanoma<http://bioportal.bioontology.org/ontologies/1422?p=terms&conceptid=http%3A%2F%2Fpurl.bioontology.org%2Fontology%2FMDR%2F10025650>
> http://purl.bioontology.org/ontology/MDR/10025650
> details<http://bioportal.bioontology.org/ajax/term_details/1422?styled=false&conceptid=http%3A%2F%2Fpurl.bioontology.org%2Fontology%2FMDR%2F10025650>
>  - visualize
> Melanoma malignant<http://bioportal.bioontology.org/ontologies/1422?p=terms&conceptid=http%3A%2F%2Fpurl.bioontology.org%2Fontology%2FMDR%2F10027150>
> http://purl.bioontology.org/ontology/MDR/10027150
> details<http://bioportal.bioontology.org/ajax/term_details/1422?styled=false&conceptid=http%3A%2F%2Fpurl.bioontology.org%2Fontology%2FMDR%2F10027150>
>  - visualize
> Melanoma recurrent<http://bioportal.bioontology.org/ontologies/1422?p=terms&conceptid=http%3A%2F%2Fpurl.bioontology.org%2Fontology%2FMDR%2F10066600>
> http://purl.bioontology.org/ontology/MDR/10066600
> details<http://bioportal.bioontology.org/ajax/term_details/1422?styled=false&conceptid=http%3A%2F%2Fpurl.bioontology.org%2Fontology%2FMDR%2F10066600>
>  - visualize
> Melanoma skin<http://bioportal.bioontology.org/ontologies/1422?p=terms&conceptid=http%3A%2F%2Fpurl.bioontology.org%2Fontology%2FMDR%2F10027155>
> http://purl.bioontology.org/ontology/MDR/10027155
> details<http://bioportal.bioontology.org/ajax/term_details/1422?styled=false&conceptid=http%3A%2F%2Fpurl.bioontology.org%2Fontology%2FMDR%2F10027155>
>  - visualize
> Metastatic melanoma<http://bioportal.bioontology.org/ontologies/1422?p=terms&conceptid=http%3A%2F%2Fpurl.bioontology.org%2Fontology%2FMDR%2F10027481>
> http://purl.bioontology.org/ontology/MDR/10027481
> details<http://bioportal.bioontology.org/ajax/term_details/1422?styled=false&conceptid=http%3A%2F%2Fpurl.bioontology.org%2Fontology%2FMDR%2F10027481>
>  - visualize
> Nodular melanoma<http://bioportal.bioontology.org/ontologies/1422?p=terms&conceptid=http%3A%2F%2Fpurl.bioontology.org%2Fontology%2FMDR%2F10029488>
> http://purl.bioontology.org/ontology/MDR/10029488
> details<http://bioportal.bioontology.org/ajax/term_details/1422?styled=false&conceptid=http%3A%2F%2Fpurl.bioontology.org%2Fontology%2FMDR%2F10029488>
>  - visualize
>  Melanoma - NCI Thesaurus<http://bioportal.bioontology.org/ontologies/1032?p=terms&conceptid=http%3A%2F%2Fncicb.nci.nih.gov%2Fxml%2Fowl%2FEVS%2FThesaurus.owl%23Melanoma>
> http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#Melanoma
> A malignant, usually aggressive tumor composed of atypical, neoplastic
> melanocytes. Most often, melanomas arise in the skin (cutaneous melanomas)
> and include the following histologic subtypes: superficial ...
> details<http://bioportal.bioontology.org/ajax/term_details/1032?styled=false&conceptid=http%3A%2F%2Fncicb.nci.nih.gov%2Fxml%2Fowl%2FEVS%2FThesaurus.owl%23Melanoma>
>  - visualize - 30 more from this ontology<http://bioportal.bioontology.org/search?query=melanoma&commit=Search#additional_results>
>
> Ok that is my rant for now, please let me know if I am not seeing
> something or if this is something that can be implemented.
> Best,
> anita
>
>
> --
> Anita Bandrowski, Ph.D.
> NIF Project Lead
> UCSD 858-822-3629
> http://neuinfo.org
> 9500 Gillman Dr.#0446
> la Jolla, CA 92093-0446
>  _______________________________________________
> bioontology-support mailing list
> bioontology-support at lists.stanford.edu
> https://mailman.stanford.edu/mailman/listinfo/bioontology-support
>
>
>


-- 
Anita Bandrowski, Ph.D.
NIF Project Lead
UCSD 858-822-3629
http://neuinfo.org
9500 Gillman Dr.#0446
la Jolla, CA 92093-0446
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