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[bioontology-support] problem with Protege import plugin

Chris Wroe chris.j.wroe at gmail.com
Tue Dec 18 05:21:45 PST 2012


Are there any known problems using the BioOntology import plugin in Protege
3.4.8?

I got this exception when trying to import 'atenolol' from MeSH

WARNING: Exception caught talking to bioportal --
java.io.FileNotFoundException:
http://rest.bioontology.org/bioportal/path/46836/?source=D001262&target=root&apikey={valid
key was here}

Moving to a Web Browser it also failed to retrieve the path for MeSH
D001262 using that URL but the concept does seem to be there and is
returned with the following Rest URL.

http://rest.bioontology.org/bioportal/concepts/46836?conceptid=D001262&apikey={valid
key
was here}

Thanks,

Chris

Health Informatician
BMJ Group
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