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[bioontology-support] How to submit labels with numbers and alpha characters

Zachariah Schmidt zack at sterlingbio.com
Tue Jan 3 16:15:38 PST 2012


Thanks Trish.  I also posted to the P4 and NCBO support mailing lists.
Zack
Sent from my Verizon Wireless BlackBerry

-----Original Message-----
From: "Trish Whetzel [via NCBO Support]" <ml-node+s2288202n4259212h54 at n4.nabble.com>
Date: Tue, 3 Jan 2012 15:55:45 
To: Zachariah Schmidt<zack at sterlingbio.com>
Subject: Re: [bioontology-support] How to submit labels with numbers and
 alpha characters



Hi Zack,

I'll check with the Protege folks about this since BioPortal is displaying the values the same as in Protege 3.4.7.  

Trish 
 


On Dec 16, 2011, at 10:46 AM, Zachariah Schmidt wrote:

> Hi, 
> I am trying to submit a test ontology created in current release of P4
> (RDF/XML). The ontology successfully uploaded and is viewable on the staging
> server at:   http://stagepurl.bioontology.org/ontology/ETMF
> http://stagepurl.bioontology.org/ontology/ETMF .
> 
> I would like the BioPortal 'preferred names' to look as follows, where each
> label has a number, space char, then alpha char, and an optional '.' char:
> 
> 100 A
> 200 A
> 
> Also my ID should not contain any underline character and should look
> something like:  
> ETMF001
> or 
> ETMF-001
> 
> or similar format without underline char.
> 
> However, when a label is created in BioPortal with a number and an alpha
> char it contains curly braces surrounding the label and the ID:  {etmf_001,
> '100 A'}
> 
> http://ncbo-support.2288202.n4.nabble.com/file/n4205127/label.jpg 
> 
> Again, my main objective is to get a number and an alpha char to show up in
> the BP Preferred Name without the curly braces and the ID...Thank you in
> advance for your help.
> 
> 
> 
> 
> -----
> Zachariah Schmidt
> SterlingBio
> --
> View this message in context: http://ncbo-support.2288202.n4.nabble.com/How-to-submit-labels-with-numbers-and-alpha-characters-tp4205127p4205127.html
> Sent from the NCBO Support mailing list archive at Nabble.com.
> _______________________________________________
> bioontology-support mailing list
> bioontology-support at lists.stanford.edu
> https://mailman.stanford.edu/mailman/listinfo/bioontology-support


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-----
Zachariah Schmidt
SterlingBio
--
View this message in context: http://ncbo-support.2288202.n4.nabble.com/How-to-submit-labels-with-numbers-and-alpha-characters-tp4205127p4259269.html
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