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[bioontology-support] BP Mapping not working, why?

Wynden, Rob Rob.Wynden at ucsf.edu
Sat Jan 7 18:06:21 PST 2012


Ketty,

Can you search by ID instead if by name?

Rob


Sent from my HTC

----- Reply message -----
From: "Mobed, Ketty" <Ketty.Mobed at ucsf.edu>
To: "Trish Whetzel" <whetzel at stanford.edu>
Cc: "Wynden, Rob" <Rob.Wynden at ucsf.edu>, "Rekapalli, Hari" <Hari.Rekapalli at ucsf.edu>, "Lakshminarayanan, Prakash" <Prakash.Lakshminarayanan at ucsf.edu>, "support at bioontology.org Support" <support at bioontology.org>
Subject: [bioontology-support] BP Mapping not working, why?
Date: Sat, Jan 7, 2012 5:34 pm



Hi Trish,

this is the problem I am having, everything is okay until I get to the new Map window. So for instance I want to 'Map From' HOM-DATASRC-ORTHO the pulled up term 'Asian' to 'Asian' in the 'Map To' HOM-ORTHO ontology. But when I type in Asian into the line, it tells me that there are 'No results found'. Why is that? Basically any term that I know exists in the HOM-ORTHO ontology it tells me that 'No results found'. Maybe I am doing something wrong.

Thanks,
Ketty

If it is hard to figure it out this way, could I maybe call you tomorrow? Thanks.
________________________________
From: Trish Whetzel [whetzel at stanford.edu]
Sent: Saturday, January 07, 2012 12:23 PM
To: Mobed, Ketty
Cc: Wynden, Rob; Rekapalli, Hari; Lakshminarayanan, Prakash; support at bioontology.org Support
Subject: Re: [bioontology-support] BP Mapping not working, why?

I am able to create new mappings between ontologies ID #s 1697 (HOM-ORTHO) and 1698 (HOM-DATASRC-ORTHO). As a test (using Mac/Firefox) I was able to map "0000000rev" as a bidirectional mapping to "Demographics" and all relevant UI components are displaying the new mapping information, i.e. the Term Mappings tab, the BioPortal Home page "Latest Mappings" section and the Mappings page.

Trish


On Jan 7, 2012, at 12:05 PM, Trish Whetzel wrote:

Hi Ketty,

Can you tell me a bit more about the steps you were performing and what browser you are using? We can talk via Skype/phone if that is easier.

Trish


On Jan 7, 2012, at 11:08 AM, Mobed, Ketty wrote:

Hi Trish,

first off Happy New Year!

I have come across a critical issue regarding required mappings between 2 new ontologies ID #s 1697 (HOM-ORTHO) and 1698 (HOM-DATASRC-ORTHO). In previous mapping tasks I was able to pull up the correct mapping node. That was with the old mapping interface. This time, with the new mapping interface, I have not been able to bring up any node in the other ontology (Map to:) that would make sense. Am I doing anything wrong? Your quick guidance is required as we have a hard deadline in the beginning of this week to do a demo.

Thanks,
Ketty
________________________________
From: Trish Whetzel [whetzel at stanford.edu]
Sent: Sunday, October 23, 2011 1:22 PM
To: Mobed, Ketty
Subject: Re: UCSF-EPIC duplicate entries

The duplicate entry is removed.

Trish


On Oct 18, 2011, at 12:01 PM, Mobed, Ketty wrote:

Hi Trish,

yes please, delete one of them. I got an error message yesterday when uploading, so I uploaded it again resulting in 2 copies of the ontology.

Thanks,
Ketty
________________________________
From: Trish Whetzel [whetzel at stanford.edu]
Sent: Tuesday, October 18, 2011 8:47 AM
To: Mobed, Ketty
Subject: UCSF-EPIC duplicate entries

Hi Ketty,

There are two entries on the "Browse" page for UCSF-EPIC, should one of these be removed?

Trish

http://bioportal.bioontology.org/ontologies/1677
http://bioportal.bioontology.org/ontologies/1678


Trish Whetzel, PhD
Outreach Coordinator
The National Center for Biomedical Ontology
Ph: 650-721-2378
http://www.bioontology.org

Now on Twitter: http://twitter.com/#!/bioontology
and "Like" us on Facebook: http://www.facebook.com/pages/National-Center-for-Biomedical-Ontology/127444774011153


Trish Whetzel, PhD
Outreach Coordinator
The National Center for Biomedical Ontology
Ph: 650-721-2378
http://www.bioontology.org

Now on Twitter: http://twitter.com/#!/bioontology
and "Like" us on Facebook: http://www.facebook.com/pages/National-Center-for-Biomedical-Ontology/127444774011153



Trish Whetzel, PhD
Outreach Coordinator
The National Center for Biomedical Ontology
Ph: 650-721-2378
http://www.bioontology.org<http://www.bioontology.org/>

Now on Twitter: http://twitter.com/#!/bioontology
and "Like" us on Facebook: http://www.facebook.com/pages/National-Center-for-Biomedical-Ontology/127444774011153

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