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[bioontology-support] mappingType

Madani,Sina AHMadani at
Tue Jan 31 14:46:48 PST 2012

not that I know of. There is a manual mapping available through the UI but I never used it.
Is there a way to post process loaded terminologies in our local instance to generate such mapping so that I can use the inter-cui option? Because the cui-s are there in the attributes.....
I guess my confusion comes from the annotator guide where it mentioned 4 different types of mapping: inter-cui, from-mrrel, automatic, and manual.

From: Ray Fergerson [mailto:ray.fergerson at]
Sent: Tuesday, January 31, 2012 4:40 PM
To: Madani,Sina; support at
Subject: RE: [bioontology-support] mappingType


Does your local installation have any mappings at all? I would be surprised. I thought that the VM came with essentially no ontologies and no mappings. If you haven't generated them then they probably aren't there.


From: bioontology-support-bounces at [mailto:bioontology-support-bounces at] On Behalf Of Madani,Sina
Sent: Tuesday, January 31, 2012 1:52 PM
To: support at
Subject: [bioontology-support] mappingType

If I want to use mappingTypes parameter, like with inter-cui option, in our local Bioportal instance, do I need to perform any pre processing on the loaded terminologies?
I set the type to inter-cui but it doesn't seem to return any mapping for a given term "melanoma"

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