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[bioontology-support] bug in provisional term update

Jim Balhoff balhoff at nescent.org
Tue Jul 10 10:59:25 PDT 2012


Hi Paul,

I just tried this and I got a 500 error: "Not a valid (absolute) URI: http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FTAO_0000107". Maybe it's not being decoded in the right place?

Thanks,
Jim


On Jul 10, 2012, at 1:42 PM, Paul R Alexander wrote:

> Jim,
> 
> I'm wondering if you could try the same call but put the contents of the body in the URL. It looks like there might be a bug preventing us from reading information from the body on PUT requests.
> 
> Thanks,
> Paul R Alexander
> Senior Software Engineer
> NCBO BioPortal
> Stanford Center for Biomedical Informatics Research
> 
> 
> On 7/5/12 2:23 PM, Jim Balhoff wrote:
>> Hi,
>> 
>> I just wanted to see if there was any ETA for fixing this bug in the provisional term update service:
>> 
>> PUT to http://rest.bioontology.org/bioportal/provisional
>> 
>> with body (replacing <my_key>):
>> 
>> apikey=<my_key>&termid=http%3A%2F%2Fpurl.bioontology.org%2Fontology%2Fprovisional%2F8e06127d-df18-477b-88ef-fca750f370ad&permanentid=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FTAO_0000107
>> 
>> results in a 403 error:
>> 
>> <errorStatus>
>>  <accessedResource>/bioportal/provisional</accessedResource>
>>  <accessDate>2012-06-22 07:32:15.550 PDT</accessDate>
>>  <shortMessage>Forbidden</shortMessage>
>>  <longMessage>A valid API key is required to call REST services. Please visit http://bioportal.bioontology.org/account to get your API key.</longMessage>
>>  <errorCode>403</errorCode>
>> </errorStatus>
>> 
>> Our project (Phenoscape) would like to start using the provisional term services in our application, so we are eager to have this resolved. Please let me know if I'm not using the service correctly.
>> 
>> Thanks!
>> Jim
>> 
>> ____________________________________________
>> James P. Balhoff, Ph.D.
>> National Evolutionary Synthesis Center
>> 2024 West Main St., Suite A200
>> Durham, NC 27705
>> USA
>> 
>> 
>> 
>> _______________________________________________
>> bioontology-support mailing list
>> bioontology-support at lists.stanford.edu
>> https://mailman.stanford.edu/mailman/listinfo/bioontology-support
> 

____________________________________________
James P. Balhoff, Ph.D.
National Evolutionary Synthesis Center
2024 West Main St., Suite A200
Durham, NC 27705
USA





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