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[bioontology-support] [BioPortal] Human Phenotype Ontology Parsing Failed

Robinson, Peter peter.robinson at charite.de
Tue Jul 17 22:39:56 PDT 2012


Thanks, Trish & Bioportal People!
-Peter


PD Dr. med. Peter N. Robinson, MSc.
Institut für Medizinische Genetik und Humangenetik
Charité - Universitätsmedizin Berlin
Augustenburger Platz 1
13353 Berlin
Germany
+4930 450566006
Mobile: 0160 93769872
peter.robinson at charite.de
http://compbio.charite.de
http://www.human-phenotype-ontology.org
Introduction to Bio-Ontologies: http://www.crcpress.com/product/isbn/9781439836651
________________________________________
Von: Trish Whetzel [whetzel at stanford.edu]
Gesendet: Dienstag, 17. Juli 2012 23:53
An: Robinson, Peter
Cc: sebastian.bauer at charite.de; sebastian.koehler at charite.de; support at bioontology.org Support
Betreff: Re: [bioontology-support] [BioPortal] Human Phenotype Ontology Parsing Failed

Hi Peter,

The parsing issue is now resolved.

Trish


On Jul 11, 2012, at 8:03 AM, Trish Whetzel wrote:

> I don't have access to those logs from BioPortal, other than the status message. Therefore one of the developers will need to review this further.
>
> Trish
>
>
> On Jul 11, 2012, at 2:52 AM, Robinson, Peter wrote:
>
>> Hi Trish,
>> that is funny because OBO Edit does not show any error. Could you send me the exact error you see?
>> -Peter
>>
>>
>> PD Dr. med. Peter N. Robinson, MSc.
>> Institut für Medizinische Genetik und Humangenetik
>> Charité - Universitätsmedizin Berlin
>> Augustenburger Platz 1
>> 13353 Berlin
>> Germany
>> +4930 450566006
>> Mobile: 0160 93769872
>> peter.robinson at charite.de
>> http://compbio.charite.de
>> http://www.human-phenotype-ontology.org
>> Introduction to Bio-Ontologies: http://www.crcpress.com/product/isbn/9781439836651
>> ________________________________________
>> Von: Trish Whetzel [whetzel at stanford.edu]
>> Gesendet: Mittwoch, 11. Juli 2012 11:31
>> An: Robinson, Peter
>> Cc: support at bioontology.org; sebastian.bauer at charite.de; sebastian.koehler at charite.de
>> Betreff: Re: [bioontology-support] [BioPortal] Human Phenotype Ontology Parsing Failed
>>
>> Hi Peter,
>>
>> Thanks for the note. It looks like new versions of HP continue to have a parsing error which the developers will look into further.
>>
>> Trish
>>
>>
>> On Jun 28, 2012, at 10:34 PM, Robinson, Peter wrote:
>>
>>> Hi BioPortal team,
>>> we would be happy to help you if you give us a look at the error message!
>>> -Peter
>>>
>>>
>>>
>>> PD Dr. med. Peter N. Robinson, MSc.
>>> Institut für Medizinische Genetik und Humangenetik
>>> Charité - Universitätsmedizin Berlin
>>> Augustenburger Platz 1
>>> 13353 Berlin
>>> Germany
>>> +4930 450566006
>>> Mobile: 0160 93769872
>>> peter.robinson at charite.de
>>> http://compbio.charite.de
>>> http://www.human-phenotype-ontology.org
>>> Introduction to Bio-Ontologies: http://www.crcpress.com/product/isbn/9781439836651
>>> ________________________________________
>>> Von: support at bioontology.org [support at bioontology.org]
>>> Gesendet: Freitag, 29. Juni 2012 03:30
>>> An: Robinson, Peter
>>> Betreff: [BioPortal] Human Phenotype Ontology Parsing Failed
>>>
>>> Human Phenotype Ontology parsing failed.
>>>
>>> The BioPortal team is investigating the issue.
>>>
>>> Please contact support at bioontology.org if you have questions.
>>>
>>> Thank you,
>>> The BioPortal Team
>>> _______________________________________________
>>> bioontology-support mailing list
>>> bioontology-support at lists.stanford.edu
>>> https://mailman.stanford.edu/mailman/listinfo/bioontology-support
>>
>
> _______________________________________________
> bioontology-support mailing list
> bioontology-support at lists.stanford.edu
> https://mailman.stanford.edu/mailman/listinfo/bioontology-support



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